eF-site ID 6fm1-B
PDB Code 6fm1
Chain B

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Title Deoxyguanylosuccinate synthase (DgsS) quaternary structure with ATPanddGMP at 2.3 Angstrom resolution
Classification BIOSYNTHETIC PROTEIN
Compound Adenylosuccinate synthetase
Source (G3FFN6_9CAUD)
Sequence B:  MKNVDLVIDLQFGSTGKGLIAGYLAEKNGYDTVINANMPN
AGHTYINAEGRKWMHKVLPNGIVSPNLKRVMLGAGSVFSI
NRLMEEIEMSKDLLHDKVAILIHPMATVLDEEAHKKAEVG
IATSIGSTGQGSMAAMVEKLQRDPTNNTIVARDVAQYDGR
IAQYVCTVEEWDMALMASERILAEGAQGFSLSLNQEFYPY
CTSRDCTPARFLADMGIPLPMLNKVIGTARCHPIRVGGTS
GGHYPDQEELTWEQLGQVPELTTVTKKVRRVFSFSFIQMQ
KAMWTCQPDEVFLNFCNYLSPMGWQDIVHQIEVAAQSRYC
DAEVKYLGFGPTFNDVELREDVM
Description (1)  Adenylosuccinate synthetase


Functional site

1) chain B
residue 142
type
sequence R
description binding site for residue DGP A 402
source : AC2

2) chain B
residue 13
type
sequence G
description binding site for residue ATP B 401
source : AC7

3) chain B
residue 14
type
sequence S
description binding site for residue ATP B 401
source : AC7

4) chain B
residue 15
type
sequence T
description binding site for residue ATP B 401
source : AC7

5) chain B
residue 16
type
sequence G
description binding site for residue ATP B 401
source : AC7

6) chain B
residue 17
type
sequence K
description binding site for residue ATP B 401
source : AC7

7) chain B
residue 18
type
sequence G
description binding site for residue ATP B 401
source : AC7

8) chain B
residue 41
type
sequence A
description binding site for residue ATP B 401
source : AC7

9) chain B
residue 42
type
sequence G
description binding site for residue ATP B 401
source : AC7

10) chain B
residue 43
type
sequence H
description binding site for residue ATP B 401
source : AC7

11) chain B
residue 44
type
sequence T
description binding site for residue ATP B 401
source : AC7

12) chain B
residue 187
type
sequence Q
description binding site for residue ATP B 401
source : AC7

13) chain B
residue 294
type
sequence N
description binding site for residue ATP B 401
source : AC7

14) chain B
residue 295
type
sequence F
description binding site for residue ATP B 401
source : AC7

15) chain B
residue 297
type
sequence N
description binding site for residue ATP B 401
source : AC7

16) chain B
residue 330
type
sequence G
description binding site for residue ATP B 401
source : AC7

17) chain B
residue 331
type
sequence P
description binding site for residue ATP B 401
source : AC7

18) chain B
residue 12
type
sequence F
description binding site for residue DGP B 402
source : AC8

19) chain B
residue 14
type
sequence S
description binding site for residue DGP B 402
source : AC8

20) chain B
residue 40
type
sequence N
description binding site for residue DGP B 402
source : AC8

21) chain B
residue 41
type
sequence A
description binding site for residue DGP B 402
source : AC8

22) chain B
residue 126
type
sequence G
description binding site for residue DGP B 402
source : AC8

23) chain B
residue 127
type
sequence S
description binding site for residue DGP B 402
source : AC8

24) chain B
residue 128
type
sequence T
description binding site for residue DGP B 402
source : AC8

25) chain B
residue 187
type
sequence Q
description binding site for residue DGP B 402
source : AC8

26) chain B
residue 191
type
sequence L
description binding site for residue DGP B 402
source : AC8

27) chain B
residue 201
type
sequence C
description binding site for residue DGP B 402
source : AC8

28) chain B
residue 202
type
sequence T
description binding site for residue DGP B 402
source : AC8

29) chain B
residue 236
type
sequence V
description binding site for residue DGP B 402
source : AC8

30) chain B
residue 240
type
sequence S
description binding site for residue DGP B 402
source : AC8

31) chain B
residue 14
type
sequence S
description binding site for residue MG B 403
source : AC9

32) chain B
residue 42
type
sequence G
description binding site for residue MG B 403
source : AC9

33) chain B
residue 269
type
sequence R
description binding site for residue MG B 403
source : AC9

34) chain B
residue 26
type
sequence E
description binding site for residue GOL B 404
source : AD1

35) chain B
residue 47
type
sequence N
description binding site for residue GOL B 404
source : AD1

36) chain B
residue 53
type
sequence W
description binding site for residue GOL B 404
source : AD1

37) chain B
residue 329
type
sequence F
description binding site for residue GOL B 405
source : AD2

38) chain B
residue 342
type
sequence V
description binding site for residue GOL B 405
source : AD2

39) chain B
residue 287
type
sequence Q
description binding site for residue GOL B 406
source : AD3

40) chain B
residue 288
type
sequence P
description binding site for residue GOL B 406
source : AD3

41) chain B
residue 289
type
sequence D
description binding site for residue GOL B 406
source : AD3

42) chain B
residue 319
type
sequence Y
description binding site for residue GOL B 406
source : AD3

43) chain B
residue 321
type
sequence D
description binding site for residue GOL B 406
source : AD3

44) chain B
residue 322
type
sequence A
description binding site for residue GOL B 406
source : AD3

45) chain B
residue 264
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6TNH
source Swiss-Prot : SWS_FT_FI3

46) chain B
residue 269
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6TNH
source Swiss-Prot : SWS_FT_FI3

47) chain B
residue 14
type ACT_SITE
sequence S
description Proton acceptor => ECO:0000255|HAMAP-Rule:MF_04166, ECO:0000305|PubMed:33926954
source Swiss-Prot : SWS_FT_FI1

48) chain B
residue 14
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

49) chain B
residue 15
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

50) chain B
residue 16
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

51) chain B
residue 17
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

52) chain B
residue 18
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

53) chain B
residue 40
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

54) chain B
residue 42
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

55) chain B
residue 43
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

56) chain B
residue 44
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

57) chain B
residue 127
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

58) chain B
residue 128
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

59) chain B
residue 142
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

60) chain B
residue 187
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

61) chain B
residue 202
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

62) chain B
residue 263
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

63) chain B
residue 294
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

64) chain B
residue 297
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

65) chain B
residue 330
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2


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