eF-site ID 6fko-AB
PDB Code 6fko
Chain A, B

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Title Deoxyguanylosuccinate synthase (DgsS) quaternary structure with ATP, dGMP, hadacidin at 2.1 Angstrom resolution
Classification BIOSYNTHETIC PROTEIN
Compound Adenylosuccinate synthetase
Source (G3FFN6_9CAUD)
Sequence A:  MENVDLVIDLQFGSTGKGLIAGYLAEKNGYDTVINANMPN
AGHTYINAEGRKWMHKVLPNGIVSPNLKRVMLGAGSVFSI
NRLMEEIEMSKDLLHDKVAILIHPMATVLDEEAHKKAEVG
IATSIGSTGQGSMAAMVEKLQRDPTNNTIVARDVAQYDGR
IAQYVCTVEEWDMALMASERILAEGAQGFSLSLNQEFYPY
CTSRDCTPARFLADMGIPLPMLNKVIGTARCHPIRVGGTS
GGHYPDQEELTWEQLGQVPELTTVTKKVRRVFSFSFIQMQ
KAMWTCQPDEVFLNFCNYLSPMGWQDIVHQIEVAAQSRYC
DAEVKYLGFGPTFNDVELREDVM
B:  MENVDLVIDLQFGSTGKGLIAGYLAEKNGYDTVINANMPN
AGHTYINAEGRKWMHKVLPNGIVSPNLKRVMLGAGSVFSI
NRLMEEIEMSKDLLHDKVAILIHPMATVLDEEAHKKAEVG
IATSIGSTGQGSMAAMVEKLQRDPTNNTIVARDVAQYDGR
IAQYVCTVEEWDMALMASERILAEGAQGFSLSLNQEFYPY
CTSRDCTPARFLADMGIPLPMLNKVIGTARCHPIRVGGTS
GGHYPDQEELTWEQLGQVPELTTVTKKVRRVFSFSFIQMQ
KAMWTCQPDEVFLNFCNYLSPMGWQDIVHQIEVAAQSRYC
DAEVKYLGFGPTFNDVELREDVM
Description (1)  Adenylosuccinate synthetase


Functional site

1) chain A
residue 41
type
sequence A
description binding site for residue HDA A 401
source : AC1

2) chain A
residue 262
type
sequence T
description binding site for residue HDA A 401
source : AC1

3) chain A
residue 263
type
sequence T
description binding site for residue HDA A 401
source : AC1

4) chain A
residue 264
type
sequence V
description binding site for residue HDA A 401
source : AC1

5) chain A
residue 269
type
sequence R
description binding site for residue HDA A 401
source : AC1

6) chain A
residue 14
type
sequence S
description binding site for residue DGP A 402
source : AC2

7) chain A
residue 40
type
sequence N
description binding site for residue DGP A 402
source : AC2

8) chain A
residue 41
type
sequence A
description binding site for residue DGP A 402
source : AC2

9) chain A
residue 126
type
sequence G
description binding site for residue DGP A 402
source : AC2

10) chain A
residue 127
type
sequence S
description binding site for residue DGP A 402
source : AC2

11) chain A
residue 128
type
sequence T
description binding site for residue DGP A 402
source : AC2

12) chain A
residue 187
type
sequence Q
description binding site for residue DGP A 402
source : AC2

13) chain A
residue 191
type
sequence L
description binding site for residue DGP A 402
source : AC2

14) chain A
residue 201
type
sequence C
description binding site for residue DGP A 402
source : AC2

15) chain A
residue 202
type
sequence T
description binding site for residue DGP A 402
source : AC2

16) chain A
residue 236
type
sequence V
description binding site for residue DGP A 402
source : AC2

17) chain B
residue 142
type
sequence R
description binding site for residue DGP A 402
source : AC2

18) chain A
residue 24
type
sequence L
description binding site for residue FLC A 403
source : AC3

19) chain A
residue 27
type
sequence K
description binding site for residue FLC A 403
source : AC3

20) chain A
residue 28
type
sequence N
description binding site for residue FLC A 403
source : AC3

21) chain A
residue 180
type
sequence R
description binding site for residue FLC A 403
source : AC3

22) chain A
residue 224
type
sequence K
description binding site for residue FLC A 403
source : AC3

23) chain A
residue 290
type
sequence E
description binding site for residue FLC A 403
source : AC3

24) chain A
residue 325
type
sequence K
description binding site for residue FLC A 403
source : AC3

25) chain A
residue 326
type
sequence Y
description binding site for residue FLC A 403
source : AC3

26) chain A
residue 14
type
sequence S
description binding site for residue ATP A 404
source : AC4

27) chain A
residue 15
type
sequence T
description binding site for residue ATP A 404
source : AC4

28) chain A
residue 16
type
sequence G
description binding site for residue ATP A 404
source : AC4

29) chain A
residue 17
type
sequence K
description binding site for residue ATP A 404
source : AC4

30) chain A
residue 18
type
sequence G
description binding site for residue ATP A 404
source : AC4

31) chain A
residue 41
type
sequence A
description binding site for residue ATP A 404
source : AC4

32) chain A
residue 42
type
sequence G
description binding site for residue ATP A 404
source : AC4

33) chain A
residue 43
type
sequence H
description binding site for residue ATP A 404
source : AC4

34) chain A
residue 44
type
sequence T
description binding site for residue ATP A 404
source : AC4

35) chain A
residue 187
type
sequence Q
description binding site for residue ATP A 404
source : AC4

36) chain A
residue 294
type
sequence N
description binding site for residue ATP A 404
source : AC4

37) chain A
residue 295
type
sequence F
description binding site for residue ATP A 404
source : AC4

38) chain A
residue 297
type
sequence N
description binding site for residue ATP A 404
source : AC4

39) chain A
residue 330
type
sequence G
description binding site for residue ATP A 404
source : AC4

40) chain A
residue 331
type
sequence P
description binding site for residue ATP A 404
source : AC4

41) chain A
residue 142
type
sequence R
description binding site for residue DGP B 401
source : AC5

42) chain B
residue 12
type
sequence F
description binding site for residue DGP B 401
source : AC5

43) chain B
residue 14
type
sequence S
description binding site for residue DGP B 401
source : AC5

44) chain B
residue 40
type
sequence N
description binding site for residue DGP B 401
source : AC5

45) chain B
residue 41
type
sequence A
description binding site for residue DGP B 401
source : AC5

46) chain B
residue 126
type
sequence G
description binding site for residue DGP B 401
source : AC5

47) chain B
residue 127
type
sequence S
description binding site for residue DGP B 401
source : AC5

48) chain B
residue 128
type
sequence T
description binding site for residue DGP B 401
source : AC5

49) chain B
residue 187
type
sequence Q
description binding site for residue DGP B 401
source : AC5

50) chain B
residue 191
type
sequence L
description binding site for residue DGP B 401
source : AC5

51) chain B
residue 201
type
sequence C
description binding site for residue DGP B 401
source : AC5

52) chain B
residue 202
type
sequence T
description binding site for residue DGP B 401
source : AC5

53) chain B
residue 236
type
sequence V
description binding site for residue DGP B 401
source : AC5

54) chain B
residue 13
type
sequence G
description binding site for residue ATP B 402
source : AC6

55) chain B
residue 14
type
sequence S
description binding site for residue ATP B 402
source : AC6

56) chain B
residue 15
type
sequence T
description binding site for residue ATP B 402
source : AC6

57) chain B
residue 16
type
sequence G
description binding site for residue ATP B 402
source : AC6

58) chain B
residue 17
type
sequence K
description binding site for residue ATP B 402
source : AC6

59) chain B
residue 18
type
sequence G
description binding site for residue ATP B 402
source : AC6

60) chain B
residue 41
type
sequence A
description binding site for residue ATP B 402
source : AC6

61) chain B
residue 42
type
sequence G
description binding site for residue ATP B 402
source : AC6

62) chain B
residue 43
type
sequence H
description binding site for residue ATP B 402
source : AC6

63) chain B
residue 44
type
sequence T
description binding site for residue ATP B 402
source : AC6

64) chain B
residue 187
type
sequence Q
description binding site for residue ATP B 402
source : AC6

65) chain B
residue 294
type
sequence N
description binding site for residue ATP B 402
source : AC6

66) chain B
residue 295
type
sequence F
description binding site for residue ATP B 402
source : AC6

67) chain B
residue 297
type
sequence N
description binding site for residue ATP B 402
source : AC6

68) chain B
residue 330
type
sequence G
description binding site for residue ATP B 402
source : AC6

69) chain B
residue 331
type
sequence P
description binding site for residue ATP B 402
source : AC6

70) chain B
residue 264
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6TNH
source Swiss-Prot : SWS_FT_FI3

71) chain B
residue 269
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6TNH
source Swiss-Prot : SWS_FT_FI3

72) chain A
residue 264
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6TNH
source Swiss-Prot : SWS_FT_FI3

73) chain A
residue 269
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6TNH
source Swiss-Prot : SWS_FT_FI3

74) chain A
residue 14
type ACT_SITE
sequence S
description Proton acceptor => ECO:0000255|HAMAP-Rule:MF_04166, ECO:0000305|PubMed:33926954
source Swiss-Prot : SWS_FT_FI1

75) chain B
residue 14
type ACT_SITE
sequence S
description Proton acceptor => ECO:0000255|HAMAP-Rule:MF_04166, ECO:0000305|PubMed:33926954
source Swiss-Prot : SWS_FT_FI1

76) chain A
residue 16
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

77) chain A
residue 17
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

78) chain A
residue 18
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

79) chain A
residue 40
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

80) chain A
residue 42
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

81) chain A
residue 43
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

82) chain A
residue 44
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

83) chain A
residue 127
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

84) chain A
residue 128
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

85) chain A
residue 142
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

86) chain A
residue 187
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

87) chain A
residue 202
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

88) chain A
residue 263
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

89) chain A
residue 294
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

90) chain A
residue 297
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

91) chain A
residue 330
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

92) chain B
residue 14
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

93) chain B
residue 15
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

94) chain B
residue 16
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

95) chain B
residue 17
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

96) chain B
residue 18
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

97) chain B
residue 40
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

98) chain B
residue 42
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

99) chain B
residue 43
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

100) chain B
residue 44
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

101) chain B
residue 127
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

102) chain B
residue 128
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

103) chain B
residue 142
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

104) chain B
residue 187
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

105) chain B
residue 202
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

106) chain B
residue 263
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

107) chain B
residue 294
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

108) chain B
residue 297
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

109) chain B
residue 330
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

110) chain A
residue 15
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2

111) chain A
residue 14
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:33926955, ECO:0007744|PDB:6FM1
source Swiss-Prot : SWS_FT_FI2


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