eF-site ID 6fbe-ABC
PDB Code 6fbe
Chain A, B, C

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Title KlenTaq DNA polymerase processing a modified primer - bearing the modification upstream at the third primer nucleotide.
Classification DNA BINDING PROTEIN
Compound DNA polymerase I, thermostable
Source (6FBE)
Sequence A:  LEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVH
RAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDP
MLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLF
ANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDV
AYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERV
LFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKIL
QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGR
LSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQ
IELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA
VDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFI
ERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDL
EARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLE
EMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPL
AVPLEVEVGIGEDWLSAKE
B:  GACCACGCAXCC
C:  AAACGGGTGCGTGGTC
Description (1)  DNA polymerase I, thermostable/DNA Complex


Functional site

1) chain A
residue 610
type
sequence D
description binding site for residue MN A 901
source : AC1

2) chain A
residue 785
type
sequence D
description binding site for residue MN A 901
source : AC1

3) chain B
residue 112
type
sequence C
description binding site for residue MN A 901
source : AC1

4) chain A
residue 610
type
sequence D
description binding site for residue MN A 902
source : AC2

5) chain A
residue 611
type
sequence Y
description binding site for residue MN A 902
source : AC2

6) chain A
residue 785
type
sequence D
description binding site for residue MN A 902
source : AC2

7) chain A
residue 371
type
sequence D
description binding site for residue EDO A 903
source : AC3

8) chain A
residue 417
type
sequence W
description binding site for residue EDO A 903
source : AC3

9) chain A
residue 435
type
sequence R
description binding site for residue EDO A 903
source : AC3

10) chain A
residue 573
type
sequence R
description binding site for residue XG4 A 904
source : AC4

11) chain A
residue 610
type
sequence D
description binding site for residue XG4 A 904
source : AC4

12) chain A
residue 611
type
sequence Y
description binding site for residue XG4 A 904
source : AC4

13) chain A
residue 612
type
sequence S
description binding site for residue XG4 A 904
source : AC4

14) chain A
residue 613
type
sequence Q
description binding site for residue XG4 A 904
source : AC4

15) chain A
residue 614
type
sequence I
description binding site for residue XG4 A 904
source : AC4

16) chain A
residue 615
type
sequence E
description binding site for residue XG4 A 904
source : AC4

17) chain A
residue 639
type
sequence H
description binding site for residue XG4 A 904
source : AC4

18) chain A
residue 659
type
sequence R
description binding site for residue XG4 A 904
source : AC4

19) chain A
residue 663
type
sequence K
description binding site for residue XG4 A 904
source : AC4

20) chain A
residue 667
type
sequence F
description binding site for residue XG4 A 904
source : AC4

21) chain A
residue 671
type
sequence Y
description binding site for residue XG4 A 904
source : AC4

22) chain A
residue 785
type
sequence D
description binding site for residue XG4 A 904
source : AC4

23) chain B
residue 112
type
sequence C
description binding site for residue XG4 A 904
source : AC4

24) chain C
residue 204
type
sequence C
description binding site for residue XG4 A 904
source : AC4

25) chain C
residue 205
type
sequence G
description binding site for residue XG4 A 904
source : AC4

26) chain A
residue 462
type
sequence E
description binding site for residue MG A 905
source : AC5

27) chain A
residue 465
type
sequence E
description binding site for residue MG A 905
source : AC5

28) chain A
residue 602
type
sequence E
description binding site for residue MG A 905
source : AC5

29) chain C
residue 213
type
sequence G
description binding site for residue EDO C 301
source : AC6

30) chain C
residue 214
type
sequence G
description binding site for residue EDO C 301
source : AC6

31) chain C
residue 215
type
sequence T
description binding site for residue EDO C 301
source : AC6

32) chain A
residue 659-678
type prosite
sequence RRAAKTINFGVLYGMSAHRL
description DNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
source prosite : PS00447


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