|
eF-site ID
|
6eu2-A |
PDB Code
|
6eu2 |
Chain
|
A |
|
click to enlarge
|
|
Title
|
Apo RNA Polymerase III - open conformation (oPOL3) |
Classification
|
TRANSCRIPTION |
Compound
|
DNA-directed RNA polymerase III subunit RPC1 |
Source
|
ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
|
Sequence
|
A: |
KEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFD
LEKDRAPKANGALDPKMGVSSSSLECATCHGNLASCHGHF
GHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKR
QFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALN
GVVKKAAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAH
NPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDAT
VPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTV
KLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYI
NSGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLT
YPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRN
LRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRL
SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQ
TEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYL
ISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPYYL
WTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPN
EMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILR
DYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDL
KQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLE
AKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGST
LNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQ
SKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETG
YMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDP
LEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETA
NEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERD
FYHSLREYINGKATALANLRKSRGMLGLLEPPAKELQGID
PDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKYRKARL
EPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV
PRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEK
TLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIE
DIAVAITRASKLKIQASDVNIIGKDRIAINVFPSENDVFY
RMQQLRRALPDVVVKGLPDISRAVINIRDDGKRELLVEGY
GLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIRE
INYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSK
MRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILG
QTMSIGTGSFKVVKGTNISEKDLVPKRCLFESLSNEAALK
AN
|
|
Description
|
(1) |
DNA-directed RNA polymerase III subunit RPC1 (E.C.2.7.7.6), DNA-directed RNA polymerase III subunit RPC2 (E.C.2.7.7.6), DNA-directed RNA polymerases I and III subunit RPAC1, DNA-directed RNA polymerase III subunit RPC9, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase III subunit RPC8, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA-directed RNA polymerase III subunit RPC5, DNA-directed RNA polymerase III subunit RPC4, DNA-directed RNA polymerase III subunit RPC3, DNA-directed RNA polymerase III subunit RPC6, DNA-directed RNA polymerase III subunit RPC7
|
|
Functional site
|
|
1)
|
chain |
A |
residue |
67 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 2000
|
source |
: AC1
|
|
2)
|
chain |
A |
residue |
69 |
type |
|
sequence |
T
|
description |
binding site for residue ZN A 2000
|
source |
: AC1
|
|
3)
|
chain |
A |
residue |
70 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 2000
|
source |
: AC1
|
|
4)
|
chain |
A |
residue |
77 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 2000
|
source |
: AC1
|
|
5)
|
chain |
A |
residue |
80 |
type |
|
sequence |
H
|
description |
binding site for residue ZN A 2000
|
source |
: AC1
|
|
6)
|
chain |
A |
residue |
107 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 2001
|
source |
: AC2
|
|
7)
|
chain |
A |
residue |
110 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 2001
|
source |
: AC2
|
|
8)
|
chain |
A |
residue |
154 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 2001
|
source |
: AC2
|
|
9)
|
chain |
A |
residue |
157 |
type |
|
sequence |
C
|
description |
binding site for residue ZN A 2001
|
source |
: AC2
|
|
10)
|
chain |
A |
residue |
511 |
type |
|
sequence |
D
|
description |
binding site for residue MG A 2002
|
source |
: AC3
|
|
11)
|
chain |
A |
residue |
513 |
type |
|
sequence |
D
|
description |
binding site for residue MG A 2002
|
source |
: AC3
|
|
12)
|
chain |
A |
residue |
515 |
type |
|
sequence |
D
|
description |
binding site for residue MG A 2002
|
source |
: AC3
|
|
13)
|
chain |
A |
residue |
515 |
type |
MOD_RES |
sequence |
D
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
14)
|
chain |
A |
residue |
107 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
15)
|
chain |
A |
residue |
110 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
16)
|
chain |
A |
residue |
154 |
type |
MOD_RES |
sequence |
C
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
17)
|
chain |
A |
residue |
511 |
type |
MOD_RES |
sequence |
D
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
18)
|
chain |
A |
residue |
513 |
type |
MOD_RES |
sequence |
D
|
description |
Phosphoserine => ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
|
|