eF-site ID 6e6m-ABC
PDB Code 6e6m
Chain A, B, C

click to enlarge
Title Crystal structure of human cellular retinol-binding protein 1 in complex with cannabidiorcin (CBDO)
Classification LIPID BINDING PROTEIN
Compound Retinol-binding protein 1
Source (RET1_HUMAN)
Sequence A:  PVDFTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDK
EIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDR
KCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMR
VEGVVCKQVFKKVQHH
B:  VDFTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDKE
IVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRK
CMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRV
EGVVCKQVFKKVQHH
C:  VDFTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDKE
IVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRK
CMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRV
EGVVCKQVFKKVQHH
Description


Functional site

1) chain A
residue 10
type
sequence M
description binding site for residue 8CB A 201
source : AC1

2) chain A
residue 13
type
sequence N
description binding site for residue 8CB A 201
source : AC1

3) chain A
residue 16
type
sequence F
description binding site for residue 8CB A 201
source : AC1

4) chain A
residue 33
type
sequence A
description binding site for residue 8CB A 201
source : AC1

5) chain A
residue 38
type
sequence P
description binding site for residue 8CB A 201
source : AC1

6) chain A
residue 55
type
sequence S
description binding site for residue 8CB A 201
source : AC1

7) chain A
residue 58
type
sequence R
description binding site for residue 8CB A 201
source : AC1

8) chain A
residue 60
type
sequence Y
description binding site for residue 8CB A 201
source : AC1

9) chain A
residue 76
type
sequence G
description binding site for residue 8CB A 201
source : AC1

10) chain A
residue 128
type
sequence Q
description binding site for residue 8CB A 201
source : AC1

11) chain B
residue 10
type
sequence M
description binding site for residue 8CB B 201
source : AC2

12) chain B
residue 13
type
sequence N
description binding site for residue 8CB B 201
source : AC2

13) chain B
residue 16
type
sequence F
description binding site for residue 8CB B 201
source : AC2

14) chain B
residue 33
type
sequence A
description binding site for residue 8CB B 201
source : AC2

15) chain B
residue 36
type
sequence L
description binding site for residue 8CB B 201
source : AC2

16) chain B
residue 38
type
sequence P
description binding site for residue 8CB B 201
source : AC2

17) chain B
residue 55
type
sequence S
description binding site for residue 8CB B 201
source : AC2

18) chain B
residue 58
type
sequence R
description binding site for residue 8CB B 201
source : AC2

19) chain B
residue 76
type
sequence G
description binding site for residue 8CB B 201
source : AC2

20) chain B
residue 128
type
sequence Q
description binding site for residue 8CB B 201
source : AC2

21) chain C
residue 10
type
sequence M
description binding site for residue 8CB C 201
source : AC3

22) chain C
residue 13
type
sequence N
description binding site for residue 8CB C 201
source : AC3

23) chain C
residue 16
type
sequence F
description binding site for residue 8CB C 201
source : AC3

24) chain C
residue 33
type
sequence A
description binding site for residue 8CB C 201
source : AC3

25) chain C
residue 36
type
sequence L
description binding site for residue 8CB C 201
source : AC3

26) chain C
residue 38
type
sequence P
description binding site for residue 8CB C 201
source : AC3

27) chain C
residue 55
type
sequence S
description binding site for residue 8CB C 201
source : AC3

28) chain C
residue 58
type
sequence R
description binding site for residue 8CB C 201
source : AC3

29) chain C
residue 76
type
sequence G
description binding site for residue 8CB C 201
source : AC3

30) chain C
residue 128
type
sequence Q
description binding site for residue 8CB C 201
source : AC3

31) chain A
residue 6-23
type prosite
sequence GYWKMLVNENFEEYLRAL
description FABP Cytosolic fatty-acid binding proteins signature. GYWkMlvNeNFEeYLRAL
source prosite : PS00214

32) chain A
residue 40
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:26900151, ECO:0007744|PDB:5H8T, ECO:0007744|PDB:5HBS, ECO:0007744|PDB:5LJB, ECO:0007744|PDB:5LJC
source Swiss-Prot : SWS_FT_FI1

33) chain B
residue 40
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:26900151, ECO:0007744|PDB:5H8T, ECO:0007744|PDB:5HBS, ECO:0007744|PDB:5LJB, ECO:0007744|PDB:5LJC
source Swiss-Prot : SWS_FT_FI1

34) chain C
residue 40
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:26900151, ECO:0007744|PDB:5H8T, ECO:0007744|PDB:5HBS, ECO:0007744|PDB:5LJB, ECO:0007744|PDB:5LJC
source Swiss-Prot : SWS_FT_FI1

35) chain A
residue 62
type BINDING
sequence M
description BINDING => ECO:0000269|PubMed:28057518, ECO:0007744|PDB:5LJC, ECO:0007744|PDB:5LJE
source Swiss-Prot : SWS_FT_FI2

36) chain B
residue 62
type BINDING
sequence M
description BINDING => ECO:0000269|PubMed:28057518, ECO:0007744|PDB:5LJC, ECO:0007744|PDB:5LJE
source Swiss-Prot : SWS_FT_FI2

37) chain C
residue 62
type BINDING
sequence M
description BINDING => ECO:0000269|PubMed:28057518, ECO:0007744|PDB:5LJC, ECO:0007744|PDB:5LJE
source Swiss-Prot : SWS_FT_FI2

38) chain A
residue 108
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:26900151, ECO:0000269|PubMed:28057518, ECO:0007744|PDB:5H8T, ECO:0007744|PDB:5HBS, ECO:0007744|PDB:5LJB, ECO:0007744|PDB:5LJC, ECO:0007744|PDB:5LJD, ECO:0007744|PDB:5LJE
source Swiss-Prot : SWS_FT_FI3

39) chain B
residue 108
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:26900151, ECO:0000269|PubMed:28057518, ECO:0007744|PDB:5H8T, ECO:0007744|PDB:5HBS, ECO:0007744|PDB:5LJB, ECO:0007744|PDB:5LJC, ECO:0007744|PDB:5LJD, ECO:0007744|PDB:5LJE
source Swiss-Prot : SWS_FT_FI3

40) chain C
residue 108
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:26900151, ECO:0000269|PubMed:28057518, ECO:0007744|PDB:5H8T, ECO:0007744|PDB:5HBS, ECO:0007744|PDB:5LJB, ECO:0007744|PDB:5LJC, ECO:0007744|PDB:5LJD, ECO:0007744|PDB:5LJE
source Swiss-Prot : SWS_FT_FI3


Display surface

Download
Links