eF-site ID 6dyy-D
PDB Code 6dyy
Chain D

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Title Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-(((3-(1-butyl-1H-1,2,3-triazol-4-yl)propyl)thio)methyl)pyrrolidin-3-ol
Classification HYDROLASE/HYDROLASE INHIBITOR
Compound 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
Source (A0A1W0VQJ9_HELPX)
Sequence D:  QGVQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKG
VYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGV
AGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESA
IFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKE
RKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISD
NADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
Description


Functional site

1) chain D
residue 107
type
sequence F
description binding site for residue EDO A 301
source : AC1

2) chain D
residue 209
type
sequence D
description binding site for residue EDO B 301
source : AC4

3) chain D
residue 107
type
sequence F
description binding site for residue OS6 C 303
source : AD2

4) chain D
residue 109
type
sequence H
description binding site for residue OS6 C 303
source : AD2

5) chain D
residue 32
type
sequence G
description binding site for residue EDO D 301
source : AD3

6) chain D
residue 33
type
sequence N
description binding site for residue EDO D 301
source : AD3

7) chain D
residue 34
type
sequence V
description binding site for residue EDO D 301
source : AD3

8) chain D
residue 49
type
sequence Y
description binding site for residue EDO D 301
source : AD3

9) chain D
residue 9
type
sequence A
description binding site for residue OS6 D 302
source : AD4

10) chain D
residue 52
type
sequence I
description binding site for residue OS6 D 302
source : AD4

11) chain D
residue 78
type
sequence V
description binding site for residue OS6 D 302
source : AD4

12) chain D
residue 79
type
sequence A
description binding site for residue OS6 D 302
source : AD4

13) chain D
residue 80
type
sequence G
description binding site for residue OS6 D 302
source : AD4

14) chain D
residue 153
type
sequence F
description binding site for residue OS6 D 302
source : AD4

15) chain D
residue 154
type
sequence V
description binding site for residue OS6 D 302
source : AD4

16) chain D
residue 172
type
sequence V
description binding site for residue OS6 D 302
source : AD4

17) chain D
residue 173
type
sequence E
description binding site for residue OS6 D 302
source : AD4

18) chain D
residue 174
type
sequence M
description binding site for residue OS6 D 302
source : AD4

19) chain D
residue 175
type
sequence E
description binding site for residue OS6 D 302
source : AD4

20) chain D
residue 197
type
sequence S
description binding site for residue OS6 D 302
source : AD4

21) chain D
residue 198
type
sequence D
description binding site for residue OS6 D 302
source : AD4

22) chain D
residue 208
type
sequence F
description binding site for residue OS6 D 302
source : AD4

23) chain D
residue 80
type BINDING
sequence G
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

24) chain D
residue 154
type BINDING
sequence V
description
source Swiss-Prot : SWS_FT_FI4

25) chain D
residue 174
type BINDING
sequence M
description
source Swiss-Prot : SWS_FT_FI4

26) chain D
residue 13
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000305|PubMed:20954236
source Swiss-Prot : SWS_FT_FI1

27) chain D
residue 198
type ACT_SITE
sequence D
description Proton donor => ECO:0000305|PubMed:20954236
source Swiss-Prot : SWS_FT_FI2


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