eF-site ID 6dyy-B
PDB Code 6dyy
Chain B

click to enlarge
Title Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with (3R,4S)-1-((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)-4-(((3-(1-butyl-1H-1,2,3-triazol-4-yl)propyl)thio)methyl)pyrrolidin-3-ol
Classification HYDROLASE/HYDROLASE INHIBITOR
Compound 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
Source (A0A1W0VQJ9_HELPX)
Sequence B:  VQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVY
HNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAG
SLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIF
IETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERK
EFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNA
DEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
Description


Functional site

1) chain B
residue 109
type
sequence H
description binding site for residue OS6 A 303
source : AC3

2) chain B
residue 115
type
sequence P
description binding site for residue OS6 A 303
source : AC3

3) chain B
residue 116
type
sequence E
description binding site for residue OS6 A 303
source : AC3

4) chain B
residue 123
type
sequence T
description binding site for residue EDO B 301
source : AC4

5) chain B
residue 125
type
sequence G
description binding site for residue EDO B 301
source : AC4

6) chain B
residue 126
type
sequence S
description binding site for residue EDO B 301
source : AC4

7) chain B
residue 205
type
sequence G
description binding site for residue EDO B 302
source : AC5

8) chain B
residue 206
type
sequence M
description binding site for residue EDO B 302
source : AC5

9) chain B
residue 209
type
sequence D
description binding site for residue EDO B 302
source : AC5

10) chain B
residue 138
type
sequence Q
description binding site for residue EDO B 303
source : AC6

11) chain B
residue 139
type
sequence H
description binding site for residue EDO B 303
source : AC6

12) chain B
residue 165
type
sequence S
description binding site for residue EDO B 303
source : AC6

13) chain B
residue 166
type
sequence E
description binding site for residue EDO B 303
source : AC6

14) chain B
residue 133
type
sequence K
description binding site for residue MG B 304
source : AC7

15) chain B
residue 9
type
sequence A
description binding site for residue OS6 B 305
source : AC8

16) chain B
residue 52
type
sequence I
description binding site for residue OS6 B 305
source : AC8

17) chain B
residue 78
type
sequence V
description binding site for residue OS6 B 305
source : AC8

18) chain B
residue 79
type
sequence A
description binding site for residue OS6 B 305
source : AC8

19) chain B
residue 80
type
sequence G
description binding site for residue OS6 B 305
source : AC8

20) chain B
residue 152
type
sequence Q
description binding site for residue OS6 B 305
source : AC8

21) chain B
residue 153
type
sequence F
description binding site for residue OS6 B 305
source : AC8

22) chain B
residue 154
type
sequence V
description binding site for residue OS6 B 305
source : AC8

23) chain B
residue 172
type
sequence V
description binding site for residue OS6 B 305
source : AC8

24) chain B
residue 173
type
sequence E
description binding site for residue OS6 B 305
source : AC8

25) chain B
residue 174
type
sequence M
description binding site for residue OS6 B 305
source : AC8

26) chain B
residue 175
type
sequence E
description binding site for residue OS6 B 305
source : AC8

27) chain B
residue 197
type
sequence S
description binding site for residue OS6 B 305
source : AC8

28) chain B
residue 198
type
sequence D
description binding site for residue OS6 B 305
source : AC8

29) chain B
residue 208
type
sequence F
description binding site for residue OS6 B 305
source : AC8

30) chain B
residue 13
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000305|PubMed:20954236
source Swiss-Prot : SWS_FT_FI1

31) chain B
residue 198
type ACT_SITE
sequence D
description Proton donor => ECO:0000305|PubMed:20954236
source Swiss-Prot : SWS_FT_FI2

32) chain B
residue 80
type BINDING
sequence G
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

33) chain B
residue 154
type BINDING
sequence V
description
source Swiss-Prot : SWS_FT_FI4

34) chain B
residue 174
type BINDING
sequence M
description
source Swiss-Prot : SWS_FT_FI4


Display surface

Download
Links