eF-site ID 6dve-D
PDB Code 6dve
Chain D

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Title Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF selenomethionine-labelled sigma factor L) with 6 nt spacer
Classification TRANSFERASE/DNA
Compound DNA-directed RNA polymerase subunit alpha
Source (6DVE)
Sequence D:  DVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPE
KDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGVEV
TRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAP
KDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAV
EDQRDGELEARAQKLEADLAELEAEGAKADARRKVRDGGE
REMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENLYR
ELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIR
NGKGQKKLRALKRLKVVAAFQQSGNSPMGMVLDAVPVIPP
ELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDLGA
PEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSL
SDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCG
LPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQRPQ
VWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAI
QLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARILMLSS
NNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQPA
SGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRP
PVEIEAELFGHSGWQPGDAWMAETTLGRVMFNELLPLGYP
FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAGFY
WATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQR
GALNHDERNEALVEIWKEATDEVGQALREHYPDDNPIITI
VDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSFRE
GLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQ
DVIVREHDCQTERGIVVELAERAPDGTLIRDPYIETSAYA
RTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQVKV
RSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQS
IGEPGTQLTGGLPRVQELFEARVPRGKAPIADVTGRVRLE
DGERFYKITIVPDDGGEEVVYDKISKRQRLRVFKHEDGSE
RVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR
EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFL
PGSLIDRAEFEAENRRVVAEGGEPAAGRPVLMGITKASLA
TDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK
LIPAGTGINRYRNIAVQPTEEARAA
Description (1)  DNA-directed RNA polymerase/ECF RNA polymerase sigma factor SigL/DNA Complex


Functional site

1) chain D
residue 891
type
sequence C
description binding site for residue ZN D 2001
source : AC1

2) chain D
residue 968
type
sequence C
description binding site for residue ZN D 2001
source : AC1

3) chain D
residue 975
type
sequence C
description binding site for residue ZN D 2001
source : AC1

4) chain D
residue 978
type
sequence C
description binding site for residue ZN D 2001
source : AC1

5) chain D
residue 60
type
sequence C
description binding site for residue ZN D 2002
source : AC2

6) chain D
residue 62
type
sequence C
description binding site for residue ZN D 2002
source : AC2

7) chain D
residue 75
type
sequence C
description binding site for residue ZN D 2002
source : AC2

8) chain D
residue 78
type
sequence C
description binding site for residue ZN D 2002
source : AC2

9) chain D
residue 975
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

10) chain D
residue 978
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

11) chain D
residue 62
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

12) chain D
residue 75
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

13) chain D
residue 78
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

14) chain D
residue 535
type DNA_BIND
sequence D
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

15) chain D
residue 537
type DNA_BIND
sequence D
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

16) chain D
residue 539
type DNA_BIND
sequence D
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

17) chain D
residue 891
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

18) chain D
residue 968
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1


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