|
eF-site ID
|
6drd-I |
PDB Code
|
6drd |
Chain
|
I |
|
click to enlarge
|
|
Title
|
RNA Pol II(G) |
Classification
|
TRANSFERASE |
Compound
|
DNA-directed RNA polymerase II subunit RPB1 |
Source
|
ORGANISM_COMMON: Human; ORGANISM_SCIENTIFIC: Homo sapiens; |
|
Sequence
|
I: |
VGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNS
CIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGH
KEAVFFQSHSDAMRLYYVCTAPHCGHRWTE
|
|
Description
|
(1) |
DNA-directed RNA polymerase II subunit RPB1 (E.C.2.7.7.6,2.7.7.48), DNA-directed RNA polymerase II subunit RPB2 (E.C.2.7.7.6), DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Gdown1,DNA-directed RNA polymerase II subunit GRINL1A
|
|
Functional site
|
|
1)
|
chain |
I |
residue |
17 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 201
|
source |
: AC2
|
|
2)
|
chain |
I |
residue |
20 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 201
|
source |
: AC2
|
|
3)
|
chain |
I |
residue |
39 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 201
|
source |
: AC2
|
|
4)
|
chain |
I |
residue |
42 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 201
|
source |
: AC2
|
|
5)
|
chain |
I |
residue |
86 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 202
|
source |
: AC3
|
|
6)
|
chain |
I |
residue |
89 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 202
|
source |
: AC3
|
|
7)
|
chain |
I |
residue |
114 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 202
|
source |
: AC3
|
|
8)
|
chain |
I |
residue |
119 |
type |
|
sequence |
C
|
description |
binding site for residue ZN I 202
|
source |
: AC3
|
|
9)
|
chain |
I |
residue |
112-118 |
type |
prosite |
sequence |
YVCTAPH
|
description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YVCTAPH
|
source |
prosite : PS00290
|
|
10)
|
chain |
I |
residue |
86-123 |
type |
prosite |
sequence |
CQKCGHKEAVFFQSHSDAMRLYYVCTAPHCGHRW
|
description |
ZF_TFIIS_1 Zinc finger TFIIS-type signature. CqkCghkeavffqSHSARaEDAmrlyyvCtaph.CghrW
|
source |
prosite : PS00466
|
|
11)
|
chain |
I |
residue |
16-42 |
type |
prosite |
sequence |
FCQECNNMLYPKEDKENRILLYACRNC
|
description |
RNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCQECNNMLypkedkenrillyaCrnC
|
source |
prosite : PS01030
|
|
12)
|
chain |
I |
residue |
20 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:27193682, ECO:0000269|PubMed:33558764, ECO:0007744|PDB:5IY6, ECO:0007744|PDB:7AE1
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
13)
|
chain |
I |
residue |
39 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:27193682, ECO:0000269|PubMed:33558764, ECO:0007744|PDB:5IY6, ECO:0007744|PDB:7AE1
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
14)
|
chain |
I |
residue |
42 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:27193682, ECO:0000269|PubMed:33558764, ECO:0007744|PDB:5IY6, ECO:0007744|PDB:7AE1
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
15)
|
chain |
I |
residue |
89 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:27193682, ECO:0000269|PubMed:33558764, ECO:0000269|PubMed:33558766, ECO:0007744|PDB:5IY6, ECO:0007744|PDB:7AE1, ECO:0007744|PDB:7D58
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
16)
|
chain |
I |
residue |
114 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:27193682, ECO:0000269|PubMed:33558764, ECO:0000269|PubMed:33558766, ECO:0007744|PDB:5IY6, ECO:0007744|PDB:7AE1, ECO:0007744|PDB:7D58
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
17)
|
chain |
I |
residue |
119 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:27193682, ECO:0000269|PubMed:33558764, ECO:0000269|PubMed:33558766, ECO:0007744|PDB:5IY6, ECO:0007744|PDB:7AE1, ECO:0007744|PDB:7D58
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
|
|