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eF-site ID
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6drd-B |
PDB Code
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6drd |
Chain
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B |
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click to enlarge
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Title
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RNA Pol II(G) |
Classification
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TRANSFERASE |
Compound
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DNA-directed RNA polymerase II subunit RPB1 |
Source
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ORGANISM_COMMON: Human; ORGANISM_SCIENTIFIC: Homo sapiens; |
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Sequence
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B: |
EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSV
QRIVEDAPPIDLQPPRYLLKFEQIYLSKPTHWERDGAPSP
MMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKT
FIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFII
NGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLEN
SSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEV
PIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE
AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEM
LPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH
YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK
DFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVS
QVLNRLTFASTLSHLRRLNSPIKPRQLHNTLWGMVCPAET
PEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE
EISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM
DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLL
LKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVM
LAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFP
DHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYP
QKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV
IMNRSAVDRGFFRSVFYRSYKEQESKKDQEEVFEKPTRET
CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLTKR
DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQ
IGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPH
AIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQK
ISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQR
LKHMVDDKI
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Description
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(1) |
DNA-directed RNA polymerase II subunit RPB1 (E.C.2.7.7.6,2.7.7.48), DNA-directed RNA polymerase II subunit RPB2 (E.C.2.7.7.6), DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Gdown1,DNA-directed RNA polymerase II subunit GRINL1A
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Functional site
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1)
|
chain |
B |
residue |
932-944 |
type |
prosite |
sequence |
GDKFASRHGQKGT
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
|
source |
prosite : PS01166
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2)
|
chain |
B |
residue |
792 |
type |
BINDING |
sequence |
D
|
description |
BINDING => ECO:0000269|PubMed:27193682, ECO:0000269|PubMed:33558764, ECO:0000269|PubMed:33558766, ECO:0000269|PubMed:33674783, ECO:0000312|PDB:7DN3, ECO:0007744|PDB:5IY6, ECO:0007744|PDB:7AE1, ECO:0007744|PDB:7D58
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source |
Swiss-Prot : SWS_FT_FI2
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3)
|
chain |
B |
residue |
942 |
type |
BINDING |
sequence |
K
|
description |
BINDING => ECO:0000269|PubMed:27193682, ECO:0000269|PubMed:33558764, ECO:0007744|PDB:5IY6, ECO:0007744|PDB:7AE1
|
source |
Swiss-Prot : SWS_FT_FI3
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4)
|
chain |
B |
residue |
1052 |
type |
MOD_RES |
sequence |
K
|
description |
N6-methyllysine => ECO:0007744|PubMed:24129315
|
source |
Swiss-Prot : SWS_FT_FI6
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