eF-site ID 6dhh-D PDB Code 6dhh Chain D click to enlarge Title RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.2 Angstrom resolution Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence D:  RGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTG TTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLL LWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFE IARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAP SFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLC AIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANR FWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLAL NLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAP QDQPHENFVFPEEVLPRGNAL Description Functional site 1) chain D residue 214 type sequence H description binding site for residue FE2 A 401 source : AC1 2) chain D residue 268 type sequence H description binding site for residue FE2 A 401 source : AC1 3) chain D residue 317 type sequence K description binding site for residue CL A 402 source : AC2 4) chain D residue 205 type sequence L description binding site for residue CLA A 404 source : AC4 5) chain D residue 175 type sequence V description binding site for residue CLA A 405 source : AC5 6) chain D residue 178 type sequence I description binding site for residue CLA A 405 source : AC5 7) chain D residue 179 type sequence F description binding site for residue CLA A 405 source : AC5 8) chain D residue 182 type sequence L description binding site for residue CLA A 405 source : AC5 9) chain D residue 209 type sequence L description binding site for residue PHO A 406 source : AC6 10) chain D residue 213 type sequence I description binding site for residue PHO A 406 source : AC6 11) chain D residue 253 type sequence W description binding site for residue PHO A 406 source : AC6 12) chain D residue 42 type sequence Y description binding site for residue PL9 A 409 source : AC9 13) chain D residue 230 type sequence S description binding site for residue SQD A 411 source : AD2 14) chain D residue 232 type sequence F description binding site for residue SQD A 411 source : AD2 15) chain D residue 233 type sequence R description binding site for residue SQD A 411 source : AD2 16) chain D residue 214 type sequence H description binding site for residue BCT A 415 source : AD6 17) chain D residue 244 type sequence Y description binding site for residue BCT A 415 source : AD6 18) chain D residue 264 type sequence K description binding site for residue BCT A 415 source : AD6 19) chain D residue 268 type sequence H description binding site for residue BCT A 415 source : AD6 20) chain D residue 159 type sequence I description binding site for residue CLA B 602 source : AD8 21) chain D residue 281 type sequence M description binding site for residue CLA B 607 source : AE4 22) chain D residue 126 type sequence M description binding site for residue CLA B 608 source : AE5 23) chain D residue 127 type sequence L description binding site for residue CLA B 608 source : AE5 24) chain D residue 141 type sequence Y description binding site for residue LHG B 622 source : AF9 25) chain D residue 269 type sequence F description binding site for residue LHG B 622 source : AF9 26) chain D residue 277 type sequence T description binding site for residue LHG B 622 source : AF9 27) chain D residue 48 type sequence W description binding site for residue PHO D 401 source : AI4 28) chain D residue 114 type sequence I description binding site for residue PHO D 401 source : AI4 29) chain D residue 121 type sequence G description binding site for residue PHO D 401 source : AI4 30) chain D residue 122 type sequence L description binding site for residue PHO D 401 source : AI4 31) chain D residue 125 type sequence F description binding site for residue PHO D 401 source : AI4 32) chain D residue 129 type sequence Q description binding site for residue PHO D 401 source : AI4 33) chain D residue 142 type sequence N description binding site for residue PHO D 401 source : AI4 34) chain D residue 174 type sequence G description binding site for residue PHO D 401 source : AI4 35) chain D residue 275 type sequence P description binding site for residue PHO D 401 source : AI4 36) chain D residue 198 type sequence M description binding site for residue CLA D 402 source : AI5 37) chain D residue 201 type sequence V description binding site for residue CLA D 402 source : AI5 38) chain D residue 202 type sequence A description binding site for residue CLA D 402 source : AI5 39) chain D residue 152 type sequence V description binding site for residue CLA D 403 source : AI6 40) chain D residue 155 type sequence S description binding site for residue CLA D 403 source : AI6 41) chain D residue 156 type sequence V description binding site for residue CLA D 403 source : AI6 42) chain D residue 182 type sequence L description binding site for residue CLA D 403 source : AI6 43) chain D residue 185 type sequence F description binding site for residue CLA D 403 source : AI6 44) chain D residue 191 type sequence W description binding site for residue CLA D 403 source : AI6 45) chain D residue 192 type sequence T description binding site for residue CLA D 403 source : AI6 46) chain D residue 197 type sequence H description binding site for residue CLA D 403 source : AI6 47) chain D residue 200 type sequence G description binding site for residue CLA D 403 source : AI6 48) chain D residue 204 type sequence V description binding site for residue CLA D 403 source : AI6 49) chain D residue 282 type sequence S description binding site for residue CLA D 403 source : AI6 50) chain D residue 283 type sequence A description binding site for residue CLA D 403 source : AI6 51) chain D residue 286 type sequence V description binding site for residue CLA D 403 source : AI6 52) chain D residue 40 type sequence C description binding site for residue CLA D 404 source : AI7 53) chain D residue 43 type sequence L description binding site for residue CLA D 404 source : AI7 54) chain D residue 89 type sequence L description binding site for residue CLA D 404 source : AI7 55) chain D residue 90 type sequence L description binding site for residue CLA D 404 source : AI7 56) chain D residue 91 type sequence L description binding site for residue CLA D 404 source : AI7 57) chain D residue 92 type sequence L description binding site for residue CLA D 404 source : AI7 58) chain D residue 93 type sequence W description binding site for residue CLA D 404 source : AI7 59) chain D residue 104 type sequence W description binding site for residue CLA D 404 source : AI7 60) chain D residue 112 type sequence T description binding site for residue CLA D 404 source : AI7 61) chain D residue 113 type sequence F description binding site for residue CLA D 404 source : AI7 62) chain D residue 116 type sequence L description binding site for residue CLA D 404 source : AI7 63) chain D residue 117 type sequence H description binding site for residue CLA D 404 source : AI7 64) chain D residue 42 type sequence Y description binding site for residue BCR D 405 source : AI8 65) chain D residue 46 type sequence G description binding site for residue BCR D 405 source : AI8 66) chain D residue 49 type sequence L description binding site for residue BCR D 405 source : AI8 67) chain D residue 50 type sequence T description binding site for residue BCR D 405 source : AI8 68) chain D residue 198 type sequence M description binding site for residue PL9 D 406 source : AI9 69) chain D residue 199 type sequence M description binding site for residue PL9 D 406 source : AI9 70) chain D residue 214 type sequence H description binding site for residue PL9 D 406 source : AI9 71) chain D residue 217 type sequence T description binding site for residue PL9 D 406 source : AI9 72) chain D residue 246 type sequence M description binding site for residue PL9 D 406 source : AI9 73) chain D residue 253 type sequence W description binding site for residue PL9 D 406 source : AI9 74) chain D residue 260 type sequence A description binding site for residue PL9 D 406 source : AI9 75) chain D residue 261 type sequence F description binding site for residue PL9 D 406 source : AI9 76) chain D residue 267 type sequence L description binding site for residue PL9 D 406 source : AI9 77) chain D residue 270 type sequence F description binding site for residue PL9 D 406 source : AI9 78) chain D residue 67 type sequence Y description binding site for residue LMG D 407 source : AJ1 79) chain D residue 71 type sequence C description binding site for residue LMG D 407 source : AJ1 80) chain D residue 72 type sequence N description binding site for residue LMG D 407 source : AJ1 81) chain D residue 73 type sequence F description binding site for residue LMG D 407 source : AJ1 82) chain D residue 256 type sequence I description binding site for residue LHG D 408 source : AJ2 83) chain D residue 260 type sequence A description binding site for residue LHG D 408 source : AJ2 84) chain D residue 261 type sequence F description binding site for residue LHG D 408 source : AJ2 85) chain D residue 262 type sequence S description binding site for residue LHG D 408 source : AJ2 86) chain D residue 263 type sequence N description binding site for residue LHG D 408 source : AJ2 87) chain D residue 266 type sequence W description binding site for residue LHG D 408 source : AJ2 88) chain D residue 219 type sequence E description binding site for residue LHG D 409 source : AJ3 89) chain D residue 220 type sequence N description binding site for residue LHG D 409 source : AJ3 90) chain D residue 229 type sequence A description binding site for residue LHG D 409 source : AJ3 91) chain D residue 231 type sequence T description binding site for residue LHG D 409 source : AJ3 92) chain D residue 232 type sequence F description binding site for residue LHG D 409 source : AJ3 93) chain D residue 19 type sequence D description binding site for residue LMG D 410 source : AJ4 94) chain D residue 23 type sequence K description binding site for residue LMG D 410 source : AJ4 95) chain D residue 32 type sequence W description binding site for residue LMG D 410 source : AJ4 96) chain D residue 134 type sequence R description binding site for residue LMG D 411 source : AJ5 97) chain D residue 27 type sequence F description binding site for residue LHG E 101 source : AJ6 98) chain D residue 24 type sequence R description binding site for residue SQD F 101 source : AJ8 99) chain D residue 26 type sequence R description binding site for residue SQD F 101 source : AJ8 100) chain D residue 87 type sequence H description binding site for residue DGD H 102 source : AK1 101) chain D residue 162 type sequence L description binding site for residue DGD H 102 source : AK1 102) chain D residue 291 type sequence L description binding site for residue DGD H 102 source : AK1 103) chain D residue 266 type sequence W description binding site for residue LHG L 101 source : AK3 104) chain D residue 273 type sequence F description binding site for residue LHG L 101 source : AK3 105) chain D residue 142 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI6 106) chain D residue 197 type BINDING sequence H description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI7 107) chain D residue 214 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 108) chain D residue 261 type BINDING sequence F description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI9 109) chain D residue 190-216 type prosite sequence NWTLNPFHMMGVAGVLGGALLCAIHGA description REACTION_CENTER Photosynthetic reaction center proteins signature. NilmhPfHqlGvagvfggalfcAmHGS source prosite : PS00244 110) chain D residue 266-288 type TRANSMEM sequence WLHFFMLFVPVTGLWMSAIGVVG description Helical => ECO:0000255|HAMAP-Rule:MF_00717 source Swiss-Prot : SWS_FT_FI1 111) chain D residue 268 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI10

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