eF-site ID 6dhg-B
PDB Code 6dhg
Chain B

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Title RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom resolution
Classification PHOTOSYNTHESIS
Compound Photosystem II protein D1 1
Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1);
Sequence B:  GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYE
LATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSIT
GETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLE
LFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGL
FGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAH
HIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSS
IAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQ
QEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAK
GGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPA
FFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSF
YGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDG
IFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSG
IDPELSPEQVEWGFYQKVGDVTTRR
Description


Functional site

1) chain B
residue 6
type
sequence Y
description binding site for residue LHG A 413
source : AD4

2) chain B
residue 7
type
sequence R
description binding site for residue LHG A 413
source : AD4

3) chain B
residue 464
type
sequence F
description binding site for residue LHG A 413
source : AD4

4) chain B
residue 468
type
sequence W
description binding site for residue LHG A 413
source : AD4

5) chain B
residue 185
type
sequence W
description binding site for residue CLA B 601
source : AD7

6) chain B
residue 186
type
sequence G
description binding site for residue CLA B 601
source : AD7

7) chain B
residue 190
type
sequence F
description binding site for residue CLA B 601
source : AD7

8) chain B
residue 189
type
sequence G
description binding site for residue CLA B 602
source : AD8

9) chain B
residue 190
type
sequence F
description binding site for residue CLA B 602
source : AD8

10) chain B
residue 192
type
sequence P
description binding site for residue CLA B 602
source : AD8

11) chain B
residue 197
type
sequence G
description binding site for residue CLA B 602
source : AD8

12) chain B
residue 201
type
sequence H
description binding site for residue CLA B 602
source : AD8

13) chain B
residue 208
type
sequence V
description binding site for residue CLA B 602
source : AD8

14) chain B
residue 246
type
sequence F
description binding site for residue CLA B 602
source : AD8

15) chain B
residue 68
type
sequence R
description binding site for residue CLA B 603
source : AD9

16) chain B
residue 69
type
sequence L
description binding site for residue CLA B 603
source : AD9

17) chain B
residue 146
type
sequence A
description binding site for residue CLA B 603
source : AD9

18) chain B
residue 149
type
sequence L
description binding site for residue CLA B 603
source : AD9

19) chain B
residue 150
type
sequence C
description binding site for residue CLA B 603
source : AD9

20) chain B
residue 153
type
sequence F
description binding site for residue CLA B 603
source : AD9

21) chain B
residue 201
type
sequence H
description binding site for residue CLA B 603
source : AD9

22) chain B
residue 202
type
sequence H
description binding site for residue CLA B 603
source : AD9

23) chain B
residue 247
type
sequence F
description binding site for residue CLA B 603
source : AD9

24) chain B
residue 252
type
sequence V
description binding site for residue CLA B 603
source : AD9

25) chain B
residue 262
type
sequence T
description binding site for residue CLA B 603
source : AD9

26) chain B
residue 33
type
sequence W
description binding site for residue CLA B 604
source : AE1

27) chain B
residue 61
type
sequence F
description binding site for residue CLA B 604
source : AE1

28) chain B
residue 65
type
sequence F
description binding site for residue CLA B 604
source : AE1

29) chain B
residue 68
type
sequence R
description binding site for residue CLA B 604
source : AE1

30) chain B
residue 149
type
sequence L
description binding site for residue CLA B 604
source : AE1

31) chain B
residue 245
type
sequence V
description binding site for residue CLA B 604
source : AE1

32) chain B
residue 248
type
sequence A
description binding site for residue CLA B 604
source : AE1

33) chain B
residue 252
type
sequence V
description binding site for residue CLA B 604
source : AE1

34) chain B
residue 451
type
sequence F
description binding site for residue CLA B 604
source : AE1

35) chain B
residue 455
type
sequence H
description binding site for residue CLA B 604
source : AE1

36) chain B
residue 458
type
sequence F
description binding site for residue CLA B 604
source : AE1

37) chain B
residue 30
type
sequence V
description binding site for residue CLA B 605
source : AE2

38) chain B
residue 34
type
sequence A
description binding site for residue CLA B 605
source : AE2

39) chain B
residue 62
type
sequence V
description binding site for residue CLA B 605
source : AE2

40) chain B
residue 66
type
sequence M
description binding site for residue CLA B 605
source : AE2

41) chain B
residue 68
type
sequence R
description binding site for residue CLA B 605
source : AE2

42) chain B
residue 96
type
sequence V
description binding site for residue CLA B 605
source : AE2

43) chain B
residue 100
type
sequence H
description binding site for residue CLA B 605
source : AE2

44) chain B
residue 103
type
sequence L
description binding site for residue CLA B 605
source : AE2

45) chain B
residue 205
type
sequence A
description binding site for residue CLA B 605
source : AE2

46) chain B
residue 209
type
sequence G
description binding site for residue CLA B 605
source : AE2

47) chain B
residue 69
type
sequence L
description binding site for residue CLA B 606
source : AE3

48) chain B
residue 90
type
sequence F
description binding site for residue CLA B 606
source : AE3

49) chain B
residue 91
type
sequence W
description binding site for residue CLA B 606
source : AE3

50) chain B
residue 96
type
sequence V
description binding site for residue CLA B 606
source : AE3

51) chain B
residue 98
type
sequence L
description binding site for residue CLA B 606
source : AE3

52) chain B
residue 100
type
sequence H
description binding site for residue CLA B 606
source : AE3

53) chain B
residue 102
type
sequence V
description binding site for residue CLA B 606
source : AE3

54) chain B
residue 149
type
sequence L
description binding site for residue CLA B 606
source : AE3

55) chain B
residue 152
type
sequence G
description binding site for residue CLA B 606
source : AE3

56) chain B
residue 153
type
sequence F
description binding site for residue CLA B 606
source : AE3

57) chain B
residue 156
type
sequence F
description binding site for residue CLA B 606
source : AE3

58) chain B
residue 157
type
sequence H
description binding site for residue CLA B 606
source : AE3

59) chain B
residue 162
type
sequence F
description binding site for residue CLA B 606
source : AE3

60) chain B
residue 164
type
sequence P
description binding site for residue CLA B 606
source : AE3

61) chain B
residue 33
type
sequence W
description binding site for residue CLA B 607
source : AE4

62) chain B
residue 37
type
sequence M
description binding site for residue CLA B 607
source : AE4

63) chain B
residue 40
type
sequence Y
description binding site for residue CLA B 607
source : AE4

64) chain B
residue 58
type
sequence Q
description binding site for residue CLA B 607
source : AE4

65) chain B
residue 59
type
sequence G
description binding site for residue CLA B 607
source : AE4

66) chain B
residue 61
type
sequence F
description binding site for residue CLA B 607
source : AE4

67) chain B
residue 324
type
sequence L
description binding site for residue CLA B 607
source : AE4

68) chain B
residue 327
type
sequence T
description binding site for residue CLA B 607
source : AE4

69) chain B
residue 328
type
sequence G
description binding site for residue CLA B 607
source : AE4

70) chain B
residue 329
type
sequence P
description binding site for residue CLA B 607
source : AE4

71) chain B
residue 450
type
sequence W
description binding site for residue CLA B 607
source : AE4

72) chain B
residue 236
type
sequence T
description binding site for residue CLA B 608
source : AE5

73) chain B
residue 239
type
sequence S
description binding site for residue CLA B 608
source : AE5

74) chain B
residue 240
type
sequence S
description binding site for residue CLA B 608
source : AE5

75) chain B
residue 243
type
sequence A
description binding site for residue CLA B 608
source : AE5

76) chain B
residue 463
type
sequence F
description binding site for residue CLA B 608
source : AE5

77) chain B
residue 466
type
sequence H
description binding site for residue CLA B 608
source : AE5

78) chain B
residue 467
type
sequence I
description binding site for residue CLA B 608
source : AE5

79) chain B
residue 139
type
sequence F
description binding site for residue CLA B 609
source : AE6

80) chain B
residue 212
type
sequence A
description binding site for residue CLA B 609
source : AE6

81) chain B
residue 215
type
sequence F
description binding site for residue CLA B 609
source : AE6

82) chain B
residue 216
type
sequence H
description binding site for residue CLA B 609
source : AE6

83) chain B
residue 219
type
sequence V
description binding site for residue CLA B 609
source : AE6

84) chain B
residue 221
type
sequence P
description binding site for residue CLA B 609
source : AE6

85) chain B
residue 222
type
sequence P
description binding site for residue CLA B 609
source : AE6

86) chain B
residue 225
type
sequence L
description binding site for residue CLA B 609
source : AE6

87) chain B
residue 135
type
sequence L
description binding site for residue CLA B 610
source : AE7

88) chain B
residue 139
type
sequence F
description binding site for residue CLA B 610
source : AE7

89) chain B
residue 142
type
sequence H
description binding site for residue CLA B 610
source : AE7

90) chain B
residue 143
type
sequence L
description binding site for residue CLA B 610
source : AE7

91) chain B
residue 236
type
sequence T
description binding site for residue CLA B 610
source : AE7

92) chain B
residue 237
type
sequence V
description binding site for residue CLA B 610
source : AE7

93) chain B
residue 240
type
sequence S
description binding site for residue CLA B 610
source : AE7

94) chain B
residue 241
type
sequence S
description binding site for residue CLA B 610
source : AE7

95) chain B
residue 6
type
sequence Y
description binding site for residue CLA B 611
source : AE8

96) chain B
residue 7
type
sequence R
description binding site for residue CLA B 611
source : AE8

97) chain B
residue 8
type
sequence V
description binding site for residue CLA B 611
source : AE8

98) chain B
residue 9
type
sequence H
description binding site for residue CLA B 611
source : AE8

99) chain B
residue 461
type
sequence L
description binding site for residue CLA B 611
source : AE8

100) chain B
residue 462
type
sequence F
description binding site for residue CLA B 611
source : AE8

101) chain B
residue 465
type
sequence G
description binding site for residue CLA B 611
source : AE8

102) chain B
residue 468
type
sequence W
description binding site for residue CLA B 611
source : AE8

103) chain B
residue 469
type
sequence H
description binding site for residue CLA B 611
source : AE8

104) chain B
residue 472
type
sequence R
description binding site for residue CLA B 611
source : AE8

105) chain B
residue 9
type
sequence H
description binding site for residue CLA B 612
source : AE9

106) chain B
residue 19
type
sequence L
description binding site for residue CLA B 612
source : AE9

107) chain B
residue 23
type
sequence H
description binding site for residue CLA B 612
source : AE9

108) chain B
residue 26
type
sequence H
description binding site for residue CLA B 612
source : AE9

109) chain B
residue 27
type
sequence T
description binding site for residue CLA B 612
source : AE9

110) chain B
residue 234
type
sequence I
description binding site for residue CLA B 612
source : AE9

111) chain B
residue 237
type
sequence V
description binding site for residue CLA B 612
source : AE9

112) chain B
residue 238
type
sequence L
description binding site for residue CLA B 612
source : AE9

113) chain B
residue 241
type
sequence S
description binding site for residue CLA B 612
source : AE9

114) chain B
residue 245
type
sequence V
description binding site for residue CLA B 612
source : AE9

115) chain B
residue 9
type
sequence H
description binding site for residue CLA B 613
source : AF1

116) chain B
residue 26
type
sequence H
description binding site for residue CLA B 613
source : AF1

117) chain B
residue 462
type
sequence F
description binding site for residue CLA B 613
source : AF1

118) chain B
residue 8
type
sequence V
description binding site for residue CLA B 614
source : AF2

119) chain B
residue 9
type
sequence H
description binding site for residue CLA B 614
source : AF2

120) chain B
residue 11
type
sequence V
description binding site for residue CLA B 614
source : AF2

121) chain B
residue 20
type
sequence I
description binding site for residue CLA B 615
source : AF3

122) chain B
residue 23
type
sequence H
description binding site for residue CLA B 615
source : AF3

123) chain B
residue 24
type
sequence L
description binding site for residue CLA B 615
source : AF3

124) chain B
residue 133
type
sequence L
description binding site for residue CLA B 615
source : AF3

125) chain B
residue 138
type
sequence M
description binding site for residue CLA B 615
source : AF3

126) chain B
residue 142
type
sequence H
description binding site for residue CLA B 615
source : AF3

127) chain B
residue 145
type
sequence L
description binding site for residue CLA B 615
source : AF3

128) chain B
residue 24
type
sequence L
description binding site for residue CLA B 616
source : AF4

129) chain B
residue 110
type
sequence A
description binding site for residue CLA B 616
source : AF4

130) chain B
residue 113
type
sequence W
description binding site for residue CLA B 616
source : AF4

131) chain B
residue 114
type
sequence H
description binding site for residue CLA B 616
source : AF4

132) chain B
residue 25
type
sequence M
description binding site for residue BCR B 617
source : AF5

133) chain B
residue 115
type
sequence W
description binding site for residue BCR B 617
source : AF5

134) chain B
residue 29
type
sequence L
description binding site for residue BCR B 618
source : AF6

135) chain B
residue 32
type
sequence G
description binding site for residue BCR B 618
source : AF6

136) chain B
residue 33
type
sequence W
description binding site for residue BCR B 618
source : AF6

137) chain B
residue 36
type
sequence S
description binding site for residue BCR B 618
source : AF6

138) chain B
residue 101
type
sequence I
description binding site for residue BCR B 618
source : AF6

139) chain B
residue 102
type
sequence V
description binding site for residue BCR B 618
source : AF6

140) chain B
residue 105
type
sequence G
description binding site for residue BCR B 618
source : AF6

141) chain B
residue 113
type
sequence W
description binding site for residue BCR B 619
source : AF7

142) chain B
residue 18
type
sequence R
description binding site for residue SQD B 621
source : AF8

143) chain B
residue 104
type
sequence S
description binding site for residue SQD B 621
source : AF8

144) chain B
residue 115
type
sequence W
description binding site for residue SQD B 621
source : AF8

145) chain B
residue 224
type
sequence R
description binding site for residue LMG D 410
source : AJ2

146) chain B
residue 193
type
sequence Y
description binding site for residue DGD H 102
source : AJ8

147) chain B
residue 258
type
sequence Y
description binding site for residue DGD H 102
source : AJ8

148) chain B
residue 274
type
sequence Q
description binding site for residue DGD H 102
source : AJ8

149) chain B
residue 277
type
sequence S
description binding site for residue DGD H 102
source : AJ8

150) chain B
residue 452
type
sequence T
description binding site for residue DGD H 102
source : AJ8

151) chain B
residue 4
type
sequence P
description binding site for residue LHG L 101
source : AK1

152) chain B
residue 5
type
sequence W
description binding site for residue LHG L 101
source : AK1

153) chain B
residue 6
type
sequence Y
description binding site for residue LHG L 101
source : AK1

154) chain B
residue 327
type
sequence T
description binding site for residue LMG M 101
source : AK2

155) chain B
residue 329
type
sequence P
description binding site for residue LMG M 101
source : AK2

156) chain B
residue 332
type
sequence K
description binding site for residue LMG M 101
source : AK2

157) chain B
residue 106
type
sequence L
description binding site for residue SQD a 412
source : AL8

158) chain B
residue 75
type
sequence W
description binding site for residue DGD a 413
source : AL9

159) chain B
residue 33
type
sequence W
description binding site for residue BCR t 101
source : AS9

160) chain B
residue 36
type
sequence S
description binding site for residue BCR t 101
source : AS9

161) chain B
residue 37
type
sequence M
description binding site for residue BCR t 101
source : AS9


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