eF-site ID 6dhg-A
PDB Code 6dhg
Chain A

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Title RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom resolution
Classification PHOTOSYNTHESIS
Compound Photosystem II protein D1 1
Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1);
Sequence A:  ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVI
AFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIG
LHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQ
WELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSD
GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGAL
FCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVA
AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGI
STMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEV
MHERNAHNFPLDLA
Description


Functional site

1) chain A
residue 215
type
sequence H
description binding site for residue FE2 A 401
source : AC1

2) chain A
residue 272
type
sequence H
description binding site for residue FE2 A 401
source : AC1

3) chain A
residue 181
type
sequence N
description binding site for residue CL A 402
source : AC2

4) chain A
residue 333
type
sequence E
description binding site for residue CL A 402
source : AC2

5) chain A
residue 337
type
sequence H
description binding site for residue CL A 403
source : AC3

6) chain A
residue 338
type
sequence N
description binding site for residue CL A 403
source : AC3

7) chain A
residue 339
type
sequence F
description binding site for residue CL A 403
source : AC3

8) chain A
residue 147
type
sequence Y
description binding site for residue CLA A 404
source : AC4

9) chain A
residue 150
type
sequence P
description binding site for residue CLA A 404
source : AC4

10) chain A
residue 153
type
sequence S
description binding site for residue CLA A 404
source : AC4

11) chain A
residue 157
type
sequence V
description binding site for residue CLA A 404
source : AC4

12) chain A
residue 183
type
sequence M
description binding site for residue CLA A 404
source : AC4

13) chain A
residue 186
type
sequence F
description binding site for residue CLA A 404
source : AC4

14) chain A
residue 198
type
sequence H
description binding site for residue CLA A 404
source : AC4

15) chain A
residue 201
type
sequence G
description binding site for residue CLA A 404
source : AC4

16) chain A
residue 206
type
sequence F
description binding site for residue CLA A 404
source : AC4

17) chain A
residue 286
type
sequence T
description binding site for residue CLA A 404
source : AC4

18) chain A
residue 287
type
sequence A
description binding site for residue CLA A 404
source : AC4

19) chain A
residue 290
type
sequence I
description binding site for residue CLA A 404
source : AC4

20) chain A
residue 199
type
sequence Q
description binding site for residue CLA A 405
source : AC5

21) chain A
residue 202
type
sequence V
description binding site for residue CLA A 405
source : AC5

22) chain A
residue 203
type
sequence A
description binding site for residue CLA A 405
source : AC5

23) chain A
residue 207
type
sequence G
description binding site for residue CLA A 405
source : AC5

24) chain A
residue 278
type
sequence W
description binding site for residue CLA A 405
source : AC5

25) chain A
residue 41
type
sequence L
description binding site for residue PHO A 406
source : AC6

26) chain A
residue 44
type
sequence A
description binding site for residue PHO A 406
source : AC6

27) chain A
residue 45
type
sequence T
description binding site for residue PHO A 406
source : AC6

28) chain A
residue 48
type
sequence F
description binding site for residue PHO A 406
source : AC6

29) chain A
residue 126
type
sequence Y
description binding site for residue PHO A 406
source : AC6

30) chain A
residue 130
type
sequence Q
description binding site for residue PHO A 406
source : AC6

31) chain A
residue 147
type
sequence Y
description binding site for residue PHO A 406
source : AC6

32) chain A
residue 150
type
sequence P
description binding site for residue PHO A 406
source : AC6

33) chain A
residue 172
type
sequence M
description binding site for residue PHO A 406
source : AC6

34) chain A
residue 175
type
sequence G
description binding site for residue PHO A 406
source : AC6

35) chain A
residue 279
type
sequence P
description binding site for residue PHO A 406
source : AC6

36) chain A
residue 36
type
sequence I
description binding site for residue CLA A 407
source : AC7

37) chain A
residue 40
type
sequence T
description binding site for residue CLA A 407
source : AC7

38) chain A
residue 93
type
sequence F
description binding site for residue CLA A 407
source : AC7

39) chain A
residue 95
type
sequence P
description binding site for residue CLA A 407
source : AC7

40) chain A
residue 96
type
sequence I
description binding site for residue CLA A 407
source : AC7

41) chain A
residue 97
type
sequence W
description binding site for residue CLA A 407
source : AC7

42) chain A
residue 114
type
sequence L
description binding site for residue CLA A 407
source : AC7

43) chain A
residue 117
type
sequence F
description binding site for residue CLA A 407
source : AC7

44) chain A
residue 118
type
sequence H
description binding site for residue CLA A 407
source : AC7

45) chain A
residue 42
type
sequence L
description binding site for residue BCR A 408
source : AC8

46) chain A
residue 211
type
sequence F
description binding site for residue PL9 A 409
source : AC9

47) chain A
residue 214
type
sequence M
description binding site for residue PL9 A 409
source : AC9

48) chain A
residue 215
type
sequence H
description binding site for residue PL9 A 409
source : AC9

49) chain A
residue 218
type
sequence L
description binding site for residue PL9 A 409
source : AC9

50) chain A
residue 255
type
sequence F
description binding site for residue PL9 A 409
source : AC9

51) chain A
residue 264
type
sequence S
description binding site for residue PL9 A 409
source : AC9

52) chain A
residue 265
type
sequence F
description binding site for residue PL9 A 409
source : AC9

53) chain A
residue 271
type
sequence L
description binding site for residue PL9 A 409
source : AC9

54) chain A
residue 274
type
sequence F
description binding site for residue PL9 A 409
source : AC9

55) chain A
residue 200
type
sequence L
description binding site for residue SQD A 410
source : AD1

56) chain A
residue 203
type
sequence A
description binding site for residue SQD A 410
source : AD1

57) chain A
residue 267
type
sequence N
description binding site for residue SQD A 410
source : AD1

58) chain A
residue 270
type
sequence S
description binding site for residue SQD A 410
source : AD1

59) chain A
residue 278
type
sequence W
description binding site for residue SQD A 410
source : AD1

60) chain A
residue 27
type
sequence R
description binding site for residue SQD A 411
source : AD2

61) chain A
residue 28
type
sequence L
description binding site for residue SQD A 411
source : AD2

62) chain A
residue 102
type
sequence L
description binding site for residue DGD A 412
source : AD3

63) chain A
residue 103
type
sequence D
description binding site for residue DGD A 412
source : AD3

64) chain A
residue 232
type
sequence S
description binding site for residue LHG A 413
source : AD4

65) chain A
residue 234
type
sequence N
description binding site for residue LHG A 413
source : AD4

66) chain A
residue 61
type
sequence D
description binding site for residue OEX A 414
source : AD5

67) chain A
residue 170
type
sequence D
description binding site for residue OEX A 414
source : AD5

68) chain A
residue 189
type
sequence E
description binding site for residue OEX A 414
source : AD5

69) chain A
residue 332
type
sequence H
description binding site for residue OEX A 414
source : AD5

70) chain A
residue 333
type
sequence E
description binding site for residue OEX A 414
source : AD5

71) chain A
residue 337
type
sequence H
description binding site for residue OEX A 414
source : AD5

72) chain A
residue 342
type
sequence D
description binding site for residue OEX A 414
source : AD5

73) chain A
residue 344
type
sequence A
description binding site for residue OEX A 414
source : AD5

74) chain A
residue 215
type
sequence H
description binding site for residue BCT A 415
source : AD6

75) chain A
residue 244
type
sequence E
description binding site for residue BCT A 415
source : AD6

76) chain A
residue 246
type
sequence Y
description binding site for residue BCT A 415
source : AD6

77) chain A
residue 272
type
sequence H
description binding site for residue BCT A 415
source : AD6

78) chain A
residue 97
type
sequence W
description binding site for residue LMG C 501
source : AF9

79) chain A
residue 98
type
sequence E
description binding site for residue LMG C 501
source : AF9

80) chain A
residue 33
type
sequence F
description binding site for residue CLA C 506
source : AG5

81) chain A
residue 131
type
sequence W
description binding site for residue CLA C 506
source : AG5

82) chain A
residue 151
type
sequence L
description binding site for residue DGD C 516
source : AH6

83) chain A
residue 163
type
sequence I
description binding site for residue DGD C 516
source : AH6

84) chain A
residue 195
type
sequence H
description binding site for residue DGD C 517
source : AH7

85) chain A
residue 197
type
sequence F
description binding site for residue DGD C 517
source : AH7

86) chain A
residue 200
type
sequence L
description binding site for residue DGD C 518
source : AH8

87) chain A
residue 300
type
sequence F
description binding site for residue DGD C 518
source : AH8

88) chain A
residue 301
type
sequence N
description binding site for residue DGD C 518
source : AH8

89) chain A
residue 302
type
sequence F
description binding site for residue DGD C 518
source : AH8

90) chain A
residue 305
type
sequence S
description binding site for residue DGD C 518
source : AH8

91) chain A
residue 206
type
sequence F
description binding site for residue PHO D 401
source : AI2

92) chain A
residue 209
type
sequence A
description binding site for residue PHO D 401
source : AI2

93) chain A
residue 210
type
sequence L
description binding site for residue PHO D 401
source : AI2

94) chain A
residue 214
type
sequence M
description binding site for residue PHO D 401
source : AI2

95) chain A
residue 176
type
sequence I
description binding site for residue CLA D 402
source : AI3

96) chain A
residue 179
type
sequence T
description binding site for residue CLA D 402
source : AI3

97) chain A
residue 183
type
sequence M
description binding site for residue CLA D 402
source : AI3

98) chain A
residue 183
type
sequence M
description binding site for residue CLA D 403
source : AI4

99) chain A
residue 52
type
sequence F
description binding site for residue PL9 D 406
source : AI7

100) chain A
residue 140
type
sequence R
description binding site for residue LHG D 409
source : AJ1

101) chain A
residue 273
type
sequence F
description binding site for residue LHG D 409
source : AJ1

102) chain A
residue 259
type
sequence I
description binding site for residue LHG E 101
source : AJ4

103) chain A
residue 262
type
sequence Y
description binding site for residue LHG E 101
source : AJ4

104) chain A
residue 264
type
sequence S
description binding site for residue LHG E 101
source : AJ4

105) chain A
residue 265
type
sequence F
description binding site for residue LHG E 101
source : AJ4

106) chain A
residue 266
type
sequence N
description binding site for residue LHG E 101
source : AJ4

107) chain A
residue 232
type
sequence S
description binding site for residue LHG L 101
source : AK1

108) chain A
residue 234
type
sequence N
description binding site for residue LHG L 101
source : AK1

109) chain A
residue 191-217
type prosite
sequence NILMHPFHQLGVAGVFGGALFCAMHGS
description REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA
source prosite : PS00244

110) chain A
residue 344
type BINDING
sequence A
description BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:16355230, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005
source Swiss-Prot : SWS_FT_FI11

111) chain A
residue 161
type SITE
sequence Y
description Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000303|PubMed:11217865, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:19219048, ECO:0000303|PubMed:21367867, ECO:0000303|DOI:10.1039/B406989G
source Swiss-Prot : SWS_FT_FI12

112) chain A
residue 190
type SITE
sequence H
description Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379
source Swiss-Prot : SWS_FT_FI13

113) chain A
residue 344
type SITE
sequence A
description Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379
source Swiss-Prot : SWS_FT_FI14

114) chain A
residue 272
type MOD_RES
sequence H
description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739
source Swiss-Prot : SWS_FT_FI5

115) chain A
residue 332
type BINDING
sequence H
description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G
source Swiss-Prot : SWS_FT_FI8

116) chain A
residue 333
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G
source Swiss-Prot : SWS_FT_FI8


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