eF-site ID 6dhf-a PDB Code 6dhf Chain a click to enlarge Title RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.08 Angstrom resolution Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence a:  ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVI AFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIG LHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQ WELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGAL FCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGI STMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEV MHERNAHNFPLDLA Description Functional site 1) chain a residue 215 type sequence H description binding site for residue FE2 a 401 source : AK5 2) chain a residue 272 type sequence H description binding site for residue FE2 a 401 source : AK5 3) chain a residue 181 type sequence N description binding site for residue CL a 402 source : AK6 4) chain a residue 333 type sequence E description binding site for residue CL a 402 source : AK6 5) chain a residue 337 type sequence H description binding site for residue CL a 403 source : AK7 6) chain a residue 338 type sequence N description binding site for residue CL a 403 source : AK7 7) chain a residue 147 type sequence Y description binding site for residue CLA a 404 source : AK8 8) chain a residue 150 type sequence P description binding site for residue CLA a 404 source : AK8 9) chain a residue 153 type sequence S description binding site for residue CLA a 404 source : AK8 10) chain a residue 157 type sequence V description binding site for residue CLA a 404 source : AK8 11) chain a residue 183 type sequence M description binding site for residue CLA a 404 source : AK8 12) chain a residue 186 type sequence F description binding site for residue CLA a 404 source : AK8 13) chain a residue 187 type sequence Q description binding site for residue CLA a 404 source : AK8 14) chain a residue 193 type sequence L description binding site for residue CLA a 404 source : AK8 15) chain a residue 198 type sequence H description binding site for residue CLA a 404 source : AK8 16) chain a residue 201 type sequence G description binding site for residue CLA a 404 source : AK8 17) chain a residue 202 type sequence V description binding site for residue CLA a 404 source : AK8 18) chain a residue 206 type sequence F description binding site for residue CLA a 404 source : AK8 19) chain a residue 286 type sequence T description binding site for residue CLA a 404 source : AK8 20) chain a residue 287 type sequence A description binding site for residue CLA a 404 source : AK8 21) chain a residue 290 type sequence I description binding site for residue CLA a 404 source : AK8 22) chain a residue 199 type sequence Q description binding site for residue CLA a 405 source : AK9 23) chain a residue 202 type sequence V description binding site for residue CLA a 405 source : AK9 24) chain a residue 203 type sequence A description binding site for residue CLA a 405 source : AK9 25) chain a residue 207 type sequence G description binding site for residue CLA a 405 source : AK9 26) chain a residue 210 type sequence L description binding site for residue CLA a 405 source : AK9 27) chain a residue 278 type sequence W description binding site for residue CLA a 405 source : AK9 28) chain a residue 41 type sequence L description binding site for residue PHO a 406 source : AL1 29) chain a residue 44 type sequence A description binding site for residue PHO a 406 source : AL1 30) chain a residue 45 type sequence T description binding site for residue PHO a 406 source : AL1 31) chain a residue 48 type sequence F description binding site for residue PHO a 406 source : AL1 32) chain a residue 126 type sequence Y description binding site for residue PHO a 406 source : AL1 33) chain a residue 130 type sequence Q description binding site for residue PHO a 406 source : AL1 34) chain a residue 147 type sequence Y description binding site for residue PHO a 406 source : AL1 35) chain a residue 279 type sequence P description binding site for residue PHO a 406 source : AL1 36) chain a residue 283 type sequence V description binding site for residue PHO a 406 source : AL1 37) chain a residue 40 type sequence T description binding site for residue CLA a 407 source : AL2 38) chain a residue 93 type sequence F description binding site for residue CLA a 407 source : AL2 39) chain a residue 95 type sequence P description binding site for residue CLA a 407 source : AL2 40) chain a residue 96 type sequence I description binding site for residue CLA a 407 source : AL2 41) chain a residue 97 type sequence W description binding site for residue CLA a 407 source : AL2 42) chain a residue 114 type sequence L description binding site for residue CLA a 407 source : AL2 43) chain a residue 117 type sequence F description binding site for residue CLA a 407 source : AL2 44) chain a residue 118 type sequence H description binding site for residue CLA a 407 source : AL2 45) chain a residue 43 type sequence A description binding site for residue BCR a 408 source : AL3 46) chain a residue 96 type sequence I description binding site for residue BCR a 408 source : AL3 47) chain a residue 211 type sequence F description binding site for residue PL9 a 409 source : AL4 48) chain a residue 214 type sequence M description binding site for residue PL9 a 409 source : AL4 49) chain a residue 215 type sequence H description binding site for residue PL9 a 409 source : AL4 50) chain a residue 218 type sequence L description binding site for residue PL9 a 409 source : AL4 51) chain a residue 255 type sequence F description binding site for residue PL9 a 409 source : AL4 52) chain a residue 263 type sequence A description binding site for residue PL9 a 409 source : AL4 53) chain a residue 264 type sequence S description binding site for residue PL9 a 409 source : AL4 54) chain a residue 265 type sequence F description binding site for residue PL9 a 409 source : AL4 55) chain a residue 271 type sequence L description binding site for residue PL9 a 409 source : AL4 56) chain a residue 200 type sequence L description binding site for residue SQD a 410 source : AL5 57) chain a residue 204 type sequence G description binding site for residue SQD a 410 source : AL5 58) chain a residue 267 type sequence N description binding site for residue SQD a 410 source : AL5 59) chain a residue 270 type sequence S description binding site for residue SQD a 410 source : AL5 60) chain a residue 278 type sequence W description binding site for residue SQD a 410 source : AL5 61) chain a residue 281 type sequence V description binding site for residue SQD a 410 source : AL5 62) chain a residue 282 type sequence G description binding site for residue SQD a 410 source : AL5 63) chain a residue 28 type sequence L description binding site for residue SQD a 411 source : AL6 64) chain a residue 30 type sequence V description binding site for residue SQD a 411 source : AL6 65) chain a residue 42 type sequence L description binding site for residue SQD a 411 source : AL6 66) chain a residue 102 type sequence L description binding site for residue DGD a 412 source : AL7 67) chain a residue 103 type sequence D description binding site for residue DGD a 412 source : AL7 68) chain a residue 61 type sequence D description binding site for residue OEX a 414 source : AL8 69) chain a residue 170 type sequence D description binding site for residue OEX a 414 source : AL8 70) chain a residue 189 type sequence E description binding site for residue OEX a 414 source : AL8 71) chain a residue 332 type sequence H description binding site for residue OEX a 414 source : AL8 72) chain a residue 333 type sequence E description binding site for residue OEX a 414 source : AL8 73) chain a residue 337 type sequence H description binding site for residue OEX a 414 source : AL8 74) chain a residue 342 type sequence D description binding site for residue OEX a 414 source : AL8 75) chain a residue 344 type sequence A description binding site for residue OEX a 414 source : AL8 76) chain a residue 131 type sequence W description binding site for residue CLA c 505 source : AO8 77) chain a residue 91 type sequence L description binding site for residue DGD c 516 source : AQ1 78) chain a residue 151 type sequence L description binding site for residue DGD c 516 source : AQ1 79) chain a residue 152 type sequence A description binding site for residue DGD c 516 source : AQ1 80) chain a residue 155 type sequence F description binding site for residue DGD c 516 source : AQ1 81) chain a residue 195 type sequence H description binding site for residue DGD c 517 source : AQ2 82) chain a residue 197 type sequence F description binding site for residue DGD c 517 source : AQ2 83) chain a residue 199 type sequence Q description binding site for residue DGD c 518 source : AQ3 84) chain a residue 200 type sequence L description binding site for residue DGD c 518 source : AQ3 85) chain a residue 300 type sequence F description binding site for residue DGD c 518 source : AQ3 86) chain a residue 301 type sequence N description binding site for residue DGD c 518 source : AQ3 87) chain a residue 302 type sequence F description binding site for residue DGD c 518 source : AQ3 88) chain a residue 305 type sequence S description binding site for residue DGD c 518 source : AQ3 89) chain a residue 93 type sequence F description binding site for residue LMG c 524 source : AQ7 90) chain a residue 97 type sequence W description binding site for residue LMG c 524 source : AQ7 91) chain a residue 98 type sequence E description binding site for residue LMG c 524 source : AQ7 92) chain a residue 215 type sequence H description binding site for residue BCT d 401 source : AQ8 93) chain a residue 244 type sequence E description binding site for residue BCT d 401 source : AQ8 94) chain a residue 246 type sequence Y description binding site for residue BCT d 401 source : AQ8 95) chain a residue 272 type sequence H description binding site for residue BCT d 401 source : AQ8 96) chain a residue 206 type sequence F description binding site for residue PHO d 402 source : AQ9 97) chain a residue 210 type sequence L description binding site for residue PHO d 402 source : AQ9 98) chain a residue 214 type sequence M description binding site for residue PHO d 402 source : AQ9 99) chain a residue 45 type sequence T description binding site for residue CLA d 403 source : AR1 100) chain a residue 158 type sequence F description binding site for residue CLA d 403 source : AR1 101) chain a residue 172 type sequence M description binding site for residue CLA d 403 source : AR1 102) chain a residue 176 type sequence I description binding site for residue CLA d 403 source : AR1 103) chain a residue 179 type sequence T description binding site for residue CLA d 403 source : AR1 104) chain a residue 183 type sequence M description binding site for residue CLA d 403 source : AR1 105) chain a residue 52 type sequence F description binding site for residue PL9 d 407 source : AR5 106) chain a residue 77 type sequence I description binding site for residue PL9 d 407 source : AR5 107) chain a residue 232 type sequence S description binding site for residue LHG d 408 source : AR6 108) chain a residue 234 type sequence N description binding site for residue LHG d 408 source : AR6 109) chain a residue 140 type sequence R description binding site for residue LHG d 410 source : AR8 110) chain a residue 142 type sequence W description binding site for residue LHG d 410 source : AR8 111) chain a residue 273 type sequence F description binding site for residue LHG d 410 source : AR8 112) chain a residue 276 type sequence A description binding site for residue LHG d 410 source : AR8 113) chain a residue 258 type sequence L description binding site for residue LHG e 101 source : AS1 114) chain a residue 260 type sequence F description binding site for residue LHG e 101 source : AS1 115) chain a residue 262 type sequence Y description binding site for residue LHG e 101 source : AS1 116) chain a residue 232 type sequence S description binding site for residue LHG l 101 source : AS9 117) chain a residue 234 type sequence N description binding site for residue LHG l 101 source : AS9 118) chain a residue 126 type MOD_RES sequence Y description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 119) chain a residue 215 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 120) chain a residue 272 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 121) chain a residue 170 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 122) chain a residue 189 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 123) chain a residue 332 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 124) chain a residue 333 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 125) chain a residue 344 type BINDING sequence A description BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:16355230, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI11 126) chain a residue 118 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 127) chain a residue 198 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 128) chain a residue 161 type SITE sequence Y description Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000303|PubMed:11217865, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:19219048, ECO:0000303|PubMed:21367867, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI12 129) chain a residue 190 type SITE sequence H description Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI13 130) chain a residue 344 type SITE sequence A description Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI14

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