eF-site ID 6dhe-a PDB Code 6dhe Chain a click to enlarge Title RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom resolution Classification PHOTOSYNTHESIS Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus (strain BP-1); Sequence a:  ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVI AFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIG LHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQ WELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGAL FCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGI STMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEV MHERNAHNFPLDLA Description Functional site 1) chain a residue 215 type sequence H description binding site for residue FE2 a 401 source : AK6 2) chain a residue 272 type sequence H description binding site for residue FE2 a 401 source : AK6 3) chain a residue 181 type sequence N description binding site for residue CL a 402 source : AK7 4) chain a residue 332 type sequence H description binding site for residue CL a 402 source : AK7 5) chain a residue 333 type sequence E description binding site for residue CL a 402 source : AK7 6) chain a residue 337 type sequence H description binding site for residue CL a 403 source : AK8 7) chain a residue 338 type sequence N description binding site for residue CL a 403 source : AK8 8) chain a residue 339 type sequence F description binding site for residue CL a 403 source : AK8 9) chain a residue 215 type sequence H description binding site for residue BCT a 404 source : AK9 10) chain a residue 244 type sequence E description binding site for residue BCT a 404 source : AK9 11) chain a residue 246 type sequence Y description binding site for residue BCT a 404 source : AK9 12) chain a residue 272 type sequence H description binding site for residue BCT a 404 source : AK9 13) chain a residue 147 type sequence Y description binding site for residue CLA a 405 source : AL1 14) chain a residue 150 type sequence P description binding site for residue CLA a 405 source : AL1 15) chain a residue 153 type sequence S description binding site for residue CLA a 405 source : AL1 16) chain a residue 157 type sequence V description binding site for residue CLA a 405 source : AL1 17) chain a residue 183 type sequence M description binding site for residue CLA a 405 source : AL1 18) chain a residue 186 type sequence F description binding site for residue CLA a 405 source : AL1 19) chain a residue 187 type sequence Q description binding site for residue CLA a 405 source : AL1 20) chain a residue 192 type sequence I description binding site for residue CLA a 405 source : AL1 21) chain a residue 193 type sequence L description binding site for residue CLA a 405 source : AL1 22) chain a residue 198 type sequence H description binding site for residue CLA a 405 source : AL1 23) chain a residue 201 type sequence G description binding site for residue CLA a 405 source : AL1 24) chain a residue 202 type sequence V description binding site for residue CLA a 405 source : AL1 25) chain a residue 206 type sequence F description binding site for residue CLA a 405 source : AL1 26) chain a residue 286 type sequence T description binding site for residue CLA a 405 source : AL1 27) chain a residue 287 type sequence A description binding site for residue CLA a 405 source : AL1 28) chain a residue 290 type sequence I description binding site for residue CLA a 405 source : AL1 29) chain a residue 199 type sequence Q description binding site for residue CLA a 406 source : AL2 30) chain a residue 202 type sequence V description binding site for residue CLA a 406 source : AL2 31) chain a residue 203 type sequence A description binding site for residue CLA a 406 source : AL2 32) chain a residue 278 type sequence W description binding site for residue CLA a 406 source : AL2 33) chain a residue 41 type sequence L description binding site for residue PHO a 407 source : AL3 34) chain a residue 44 type sequence A description binding site for residue PHO a 407 source : AL3 35) chain a residue 45 type sequence T description binding site for residue PHO a 407 source : AL3 36) chain a residue 48 type sequence F description binding site for residue PHO a 407 source : AL3 37) chain a residue 126 type sequence Y description binding site for residue PHO a 407 source : AL3 38) chain a residue 130 type sequence Q description binding site for residue PHO a 407 source : AL3 39) chain a residue 147 type sequence Y description binding site for residue PHO a 407 source : AL3 40) chain a residue 172 type sequence M description binding site for residue PHO a 407 source : AL3 41) chain a residue 279 type sequence P description binding site for residue PHO a 407 source : AL3 42) chain a residue 40 type sequence T description binding site for residue CLA a 408 source : AL4 43) chain a residue 93 type sequence F description binding site for residue CLA a 408 source : AL4 44) chain a residue 95 type sequence P description binding site for residue CLA a 408 source : AL4 45) chain a residue 96 type sequence I description binding site for residue CLA a 408 source : AL4 46) chain a residue 97 type sequence W description binding site for residue CLA a 408 source : AL4 47) chain a residue 114 type sequence L description binding site for residue CLA a 408 source : AL4 48) chain a residue 117 type sequence F description binding site for residue CLA a 408 source : AL4 49) chain a residue 118 type sequence H description binding site for residue CLA a 408 source : AL4 50) chain a residue 43 type sequence A description binding site for residue BCR a 409 source : AL5 51) chain a residue 51 type sequence A description binding site for residue BCR a 409 source : AL5 52) chain a residue 96 type sequence I description binding site for residue BCR a 409 source : AL5 53) chain a residue 211 type sequence F description binding site for residue PL9 a 410 source : AL6 54) chain a residue 215 type sequence H description binding site for residue PL9 a 410 source : AL6 55) chain a residue 218 type sequence L description binding site for residue PL9 a 410 source : AL6 56) chain a residue 255 type sequence F description binding site for residue PL9 a 410 source : AL6 57) chain a residue 263 type sequence A description binding site for residue PL9 a 410 source : AL6 58) chain a residue 264 type sequence S description binding site for residue PL9 a 410 source : AL6 59) chain a residue 265 type sequence F description binding site for residue PL9 a 410 source : AL6 60) chain a residue 271 type sequence L description binding site for residue PL9 a 410 source : AL6 61) chain a residue 200 type sequence L description binding site for residue SQD a 411 source : AL7 62) chain a residue 204 type sequence G description binding site for residue SQD a 411 source : AL7 63) chain a residue 267 type sequence N description binding site for residue SQD a 411 source : AL7 64) chain a residue 270 type sequence S description binding site for residue SQD a 411 source : AL7 65) chain a residue 278 type sequence W description binding site for residue SQD a 411 source : AL7 66) chain a residue 281 type sequence V description binding site for residue SQD a 411 source : AL7 67) chain a residue 28 type sequence L description binding site for residue SQD a 412 source : AL8 68) chain a residue 30 type sequence V description binding site for residue SQD a 412 source : AL8 69) chain a residue 42 type sequence L description binding site for residue SQD a 412 source : AL8 70) chain a residue 61 type sequence D description binding site for residue OEX a 414 source : AL9 71) chain a residue 170 type sequence D description binding site for residue OEX a 414 source : AL9 72) chain a residue 189 type sequence E description binding site for residue OEX a 414 source : AL9 73) chain a residue 332 type sequence H description binding site for residue OEX a 414 source : AL9 74) chain a residue 333 type sequence E description binding site for residue OEX a 414 source : AL9 75) chain a residue 337 type sequence H description binding site for residue OEX a 414 source : AL9 76) chain a residue 342 type sequence D description binding site for residue OEX a 414 source : AL9 77) chain a residue 344 type sequence A description binding site for residue OEX a 414 source : AL9 78) chain a residue 131 type sequence W description binding site for residue CLA c 505 source : AP1 79) chain a residue 91 type sequence L description binding site for residue DGD c 516 source : AQ3 80) chain a residue 155 type sequence F description binding site for residue DGD c 516 source : AQ3 81) chain a residue 195 type sequence H description binding site for residue DGD c 517 source : AQ4 82) chain a residue 199 type sequence Q description binding site for residue DGD c 518 source : AQ5 83) chain a residue 200 type sequence L description binding site for residue DGD c 518 source : AQ5 84) chain a residue 301 type sequence N description binding site for residue DGD c 518 source : AQ5 85) chain a residue 302 type sequence F description binding site for residue DGD c 518 source : AQ5 86) chain a residue 305 type sequence S description binding site for residue DGD c 518 source : AQ5 87) chain a residue 93 type sequence F description binding site for residue LMG c 524 source : AQ9 88) chain a residue 97 type sequence W description binding site for residue LMG c 524 source : AQ9 89) chain a residue 98 type sequence E description binding site for residue LMG c 524 source : AQ9 90) chain a residue 206 type sequence F description binding site for residue PHO d 401 source : AR1 91) chain a residue 210 type sequence L description binding site for residue PHO d 401 source : AR1 92) chain a residue 214 type sequence M description binding site for residue PHO d 401 source : AR1 93) chain a residue 45 type sequence T description binding site for residue CLA d 402 source : AR2 94) chain a residue 158 type sequence F description binding site for residue CLA d 402 source : AR2 95) chain a residue 176 type sequence I description binding site for residue CLA d 402 source : AR2 96) chain a residue 179 type sequence T description binding site for residue CLA d 402 source : AR2 97) chain a residue 183 type sequence M description binding site for residue CLA d 402 source : AR2 98) chain a residue 206 type sequence F description binding site for residue CLA d 403 source : AR3 99) chain a residue 77 type sequence I description binding site for residue PL9 d 406 source : AR6 100) chain a residue 232 type sequence S description binding site for residue LHG d 407 source : AR7 101) chain a residue 234 type sequence N description binding site for residue LHG d 407 source : AR7 102) chain a residue 140 type sequence R description binding site for residue LHG d 409 source : AR9 103) chain a residue 142 type sequence W description binding site for residue LHG d 409 source : AR9 104) chain a residue 273 type sequence F description binding site for residue LHG d 409 source : AR9 105) chain a residue 258 type sequence L description binding site for residue LHG e 101 source : AS2 106) chain a residue 262 type sequence Y description binding site for residue LHG e 101 source : AS2 107) chain a residue 232 type sequence S description binding site for residue LHG l 101 source : AS8 108) chain a residue 234 type sequence N description binding site for residue LHG l 101 source : AS8 109) chain a residue 102 type sequence L description binding site for residue DGD o 301 source : AS9 110) chain a residue 103 type sequence D description binding site for residue DGD o 301 source : AS9 111) chain a residue 126 type MOD_RES sequence Y description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 112) chain a residue 215 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 113) chain a residue 272 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 114) chain a residue 118 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 115) chain a residue 198 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 116) chain a residue 344 type BINDING sequence A description BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:16355230, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI11 117) chain a residue 161 type SITE sequence Y description Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000303|PubMed:11217865, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:19219048, ECO:0000303|PubMed:21367867, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI12 118) chain a residue 344 type SITE sequence A description Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI14 119) chain a residue 170 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 120) chain a residue 189 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 121) chain a residue 332 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 122) chain a residue 333 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 123) chain a residue 190 type SITE sequence H description Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI13

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