eF-site ID 6dfm-B
PDB Code 6dfm
Chain B

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Title Crystal structure of human GRP78 in complex with 8-aminoadenosine
Classification CHAPERONE
Compound Endoplasmic reticulum chaperone BiP
Source (BIP_HUMAN)
Sequence B:  DVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSY
VAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWND
PSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEI
SAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK
DAGTIAGLNVMRIINEPTAAAIAYGLDKREGEKNILVFDL
GGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEH
FIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQA
RIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKV
LEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPS
RGINPDEAVAYGAAVQAGVLSG
Description


Functional site

1) chain B
residue 39
type
sequence Y
description binding site for residue 3BH B 501
source : AC2

2) chain B
residue 227
type
sequence G
description binding site for residue 3BH B 501
source : AC2

3) chain B
residue 255
type
sequence G
description binding site for residue 3BH B 501
source : AC2

4) chain B
residue 293
type
sequence E
description binding site for residue 3BH B 501
source : AC2

5) chain B
residue 296
type
sequence K
description binding site for residue 3BH B 501
source : AC2

6) chain B
residue 297
type
sequence R
description binding site for residue 3BH B 501
source : AC2

7) chain B
residue 300
type
sequence S
description binding site for residue 3BH B 501
source : AC2

8) chain B
residue 364
type
sequence G
description binding site for residue 3BH B 501
source : AC2

9) chain B
residue 365
type
sequence S
description binding site for residue 3BH B 501
source : AC2

10) chain B
residue 367
type
sequence R
description binding site for residue 3BH B 501
source : AC2

11) chain B
residue 368
type
sequence I
description binding site for residue 3BH B 501
source : AC2

12) chain B
residue 364
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:21526763
source Swiss-Prot : SWS_FT_FI1

13) chain B
residue 36
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:21526763
source Swiss-Prot : SWS_FT_FI1

14) chain B
residue 96
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:21526763
source Swiss-Prot : SWS_FT_FI1

15) chain B
residue 227
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:21526763
source Swiss-Prot : SWS_FT_FI1

16) chain B
residue 293
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:21526763
source Swiss-Prot : SWS_FT_FI1

17) chain B
residue 86
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P06761
source Swiss-Prot : SWS_FT_FI2

18) chain B
residue 125
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P20029
source Swiss-Prot : SWS_FT_FI3

19) chain B
residue 213
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P20029
source Swiss-Prot : SWS_FT_FI3

20) chain B
residue 326
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P20029
source Swiss-Prot : SWS_FT_FI3

21) chain B
residue 160
type MOD_RES
sequence Y
description 3'-nitrotyrosine => ECO:0000250|UniProtKB:P20029
source Swiss-Prot : SWS_FT_FI4

22) chain B
residue 271
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P0DMV8
source Swiss-Prot : SWS_FT_FI5

23) chain B
residue 353
type MOD_RES
sequence K
description N6-acetyllysine; alternate => ECO:0000250|UniProtKB:P20029
source Swiss-Prot : SWS_FT_FI6

24) chain B
residue 352
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25114211, ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI7

25) chain B
residue 353
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1); alternate => ECO:0007744|PubMed:25114211
source Swiss-Prot : SWS_FT_FI8


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