eF-site ID 6df8-ADE
PDB Code 6df8
Chain A, D, E

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Title Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS), pH 6.5
Classification DNA BINDING PROTEIN/DNA
Compound Transcriptional regulator Kaiso
Source (6DF8)
Sequence A:  DHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK
YPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFIN
YQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAY
D:  TGCTTCCTGCCAATAACG
E:  CGTTATTGGCAGGAAGCA
Description


Functional site

1) chain A
residue 496
type
sequence C
description binding site for residue ZN A 701
source : AC1

2) chain A
residue 499
type
sequence C
description binding site for residue ZN A 701
source : AC1

3) chain A
residue 512
type
sequence H
description binding site for residue ZN A 701
source : AC1

4) chain A
residue 516
type
sequence H
description binding site for residue ZN A 701
source : AC1

5) chain A
residue 524
type
sequence C
description binding site for residue ZN A 702
source : AC2

6) chain A
residue 527
type
sequence C
description binding site for residue ZN A 702
source : AC2

7) chain A
residue 540
type
sequence H
description binding site for residue ZN A 702
source : AC2

8) chain A
residue 544
type
sequence H
description binding site for residue ZN A 702
source : AC2

9) chain A
residue 552
type
sequence C
description binding site for residue ZN A 703
source : AC3

10) chain A
residue 555
type
sequence C
description binding site for residue ZN A 703
source : AC3

11) chain A
residue 568
type
sequence H
description binding site for residue ZN A 703
source : AC3

12) chain A
residue 573
type
sequence H
description binding site for residue ZN A 703
source : AC3

13) chain A
residue 547
type
sequence E
description binding site for residue CL A 704
source : AC4

14) chain A
residue 548
type
sequence R
description binding site for residue CL A 704
source : AC4

15) chain A
residue 548
type
sequence R
description binding site for residue CL A 704
source : AC4

16) chain A
residue 590
type
sequence R
description binding site for residue CL A 704
source : AC4

17) chain A
residue 494-516
type ZN_FING
sequence YICIVCKRSYVCLTSLRRHFNIH
description C2H2-type 1 => ECO:0000255|PROSITE-ProRule:PRU00042
source Swiss-Prot : SWS_FT_FI1

18) chain A
residue 522-544
type ZN_FING
sequence YPCRYCEKVFPLAEYRTKHEIHH
description C2H2-type 2 => ECO:0000255|PROSITE-ProRule:PRU00042
source Swiss-Prot : SWS_FT_FI2

19) chain A
residue 550-573
type ZN_FING
sequence YQCLACGKSFINYQFMSSHIKSVH
description C2H2-type 3 => ECO:0000255|PROSITE-ProRule:PRU00042
source Swiss-Prot : SWS_FT_FI3

20) chain A
residue 582
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI5

21) chain A
residue 539
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI4

22) chain A
residue 570
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI4

23) chain A
residue 496-516
type prosite
sequence CIVCKRSYVCLTSLRRHFNIH
description ZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Civ..CkrsYvcltslrrHfni..H
source prosite : PS00028

24) chain A
residue 524-544
type prosite
sequence CRYCEKVFPLAEYRTKHEIHH
description ZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Civ..CkrsYvcltslrrHfni..H
source prosite : PS00028

25) chain A
residue 552-573
type prosite
sequence CLACGKSFINYQFMSSHIKSVH
description ZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Civ..CkrsYvcltslrrHfni..H
source prosite : PS00028


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