|
|
eF-site ID
|
6dbi-EFGHIJ |
|
PDB Code
|
6dbi |
|
Chain
|
E, F, G, H, I, J |
|
click to enlarge
|
|
|
Title
|
Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS nicked DNA intermediates |
|
Classification
|
RECOMBINATION/DNA |
|
Compound
|
Recombination activating gene 1 - MBP chimera |
|
Source
|
(6DBI) |
|
|
Sequence
|
E: |
CACAGTGCTACAGACTGGAACAAAAACCCTGCAG
|
| F: |
CTGCAGGGTTTTTGTTCCAGTCTGTAGCACTGTGTAAGAC
AGGCCAGATC
|
| G: |
CTGCAGGGTTTTTGTACAGCCAGACAGTGGAGTACTACCA
CTGTGTAAGACAGGCCAGATC
|
| H: |
CACAGTGGTAGTACTCCACTGTCTGGCTGTACAAAAACCC
TGCAG
|
| I: |
GATCTGGCCTGTCTTA
|
| J: |
GATCTGGCCTGTCTTA
|
|
|
Description
|
|
Functional site
|
|
|
1)
|
chain |
G |
| residue |
46 |
| type |
|
| sequence |
T
|
| description |
binding site for residue CA C 1102
|
| source |
: AC2
|
|
|
2)
|
chain |
J |
| residue |
16 |
| type |
|
| sequence |
A
|
| description |
binding site for residue CA C 1102
|
| source |
: AC2
|
|
|
3)
|
chain |
G |
| residue |
45 |
| type |
|
| sequence |
G
|
| description |
binding site for residue CA C 1103
|
| source |
: AC3
|
|
|
4)
|
chain |
G |
| residue |
46 |
| type |
|
| sequence |
T
|
| description |
binding site for residue CA C 1103
|
| source |
: AC3
|
|
|
5)
|
chain |
I |
| residue |
16 |
| type |
|
| sequence |
A
|
| description |
binding site for residue CA A 1102
|
| source |
: AC5
|
|
|
6)
|
chain |
F |
| residue |
35 |
| type |
|
| sequence |
T
|
| description |
binding site for residue CA A 1103
|
| source |
: AC6
|
|
|
7)
|
chain |
I |
| residue |
16 |
| type |
|
| sequence |
A
|
| description |
binding site for residue CA A 1103
|
| source |
: AC6
|
|
|
|