eF-site ID 6d9l-AF
PDB Code 6d9l
Chain A, F

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Title Ternary RsAgo Complex with Guide RNA and Target DNA Containing G-A Non-canonical Pair
Classification RNA BINDING PROTEIN/RNA/DNA
Compound Uncharacterized protein
Source (6D9L)
Sequence A:  RQLVSNGFEVNLPDQVEVIVRDLPDPSKVKEERTRLMGYW
FVHWFDGKLFHLRIKAGGPNVDGEHRAIRTAEHPWLLRAR
LDDALEEALPKYAAVKKRPFTFLAQKDELIDAAATAAGLS
HRLLNSFKVIPRFALSPKIYEPVDGTTRVGVFVTIGMRYD
IEASLRDLLEAGIDLRGMYVVRRKRQPGERGLLGRVRAIS
DDMVQLFEETDLASVNVNDAKLEGSKENFTRCLSALLGHN
YKKLLNALDDQEAGYRTGPRFDDAVRRMGEFLAKKPIRLA
DNINAQVGDRIVFSNEGQARNVRLAPKVEYVFDRTGAKSA
EYAWRGLSQFGPFDRPSFANRSPRILVVYPSSTQGKVENF
LSAFRDGMGSNYSGFSKGFVDLMGLTKVEFVMCPVEVSSA
DRNGAHTKYNSAIEDKLAGAGEVHAGIVVLFEDHARLPDD
RNPYIHTKSLLLTLGVPTQQVRMPTVLLEPKSLQYTLQNF
SIATYAKLNGTPWTVNHDKAINDELVVGMGLAELSGSRTE
KRQRFVGITTVFAGDGSYLLGNVSKECEYEGYSDAIRESM
TGILRELKKRNNWRPGDTVRVVFHAHRPLKRVDVASIVFE
CTREIGSDQNIQMAFVTVSHDHPFVLIDRSERGLEAYKGS
TARKGVFAPPRGAISRVGRLTRLLAVNSPQLIKRANTPLP
TPLLVSLHPDSTFKDVDYLAEQALKFTSLSWRSTLPAATP
VTIFYSERIAELLGRLKSIPNWSSANLNIKLKWSRWFL
F:  RQLVSNGFEVNLPDQVEVIVRDLPDPSKVKEERTRLMGYW
FVHWFDGKLFHLRIKAGGPNVDGEHRAIRTAEHPWLLRAR
LDDALEEALPKYAAVKKRPFTFLAQKDELIDAAATAAGLS
HRLLNSFKVIPRFALSPKIYEPVDGTTRVGVFVTIGMRYD
IEASLRDLLEAGIDLRGMYVVRRKRQPGERGLLGRVRAIS
DDMVQLFEETDLASVNVNDAKLEGSKENFTRCLSALLGHN
YKKLLNALDDQEAGYRTGPRFDDAVRRMGEFLAKKPIRLA
DNINAQVGDRIVFSNEGQARNVRLAPKVEYVFDRTGAKSA
EYAWRGLSQFGPFDRPSFANRSPRILVVYPSSTQGKVENF
LSAFRDGMGSNYSGFSKGFVDLMGLTKVEFVMCPVEVSSA
DRNGAHTKYNSAIEDKLAGAGEVHAGIVVLFEDHARLPDD
RNPYIHTKSLLLTLGVPTQQVRMPTVLLEPKSLQYTLQNF
SIATYAKLNGTPWTVNHDKAINDELVVGMGLAELSGSRTE
KRQRFVGITTVFAGDGSYLLGNVSKECEYEGYSDAIRESM
TGILRELKKRNNWRPGDTVRVVFHAHRPLKRVDVASIVFE
CTREIGSDQNIQMAFVTVSHDHPFVLIDRSERGLEAYKGS
TARKGVFAPPRGAISRVGRLTRLLAVNSPQLIKRANTPLP
TPLLVSLHPDSTFKDVDYLAEQALKFTSLSWRSTLPAATP
VTIFYSERIAELLGRLKSIPNWSSANLNIKLKWSRWFL
Description


Functional site

1) chain A
residue 777
type
sequence L
description binding site for residue MG C 101
source : AC1

2) chain F
residue 478
type
sequence Q
description binding site for residue MG H 101
source : AC2

3) chain F
residue 777
type
sequence L
description binding site for residue MG H 101
source : AC2

4) chain A
residue 777
type BINDING
sequence L
description BINDING => ECO:0000269|PubMed:27325485, ECO:0000269|PubMed:29996105, ECO:0000312|PDB:5AWH, ECO:0000312|PDB:6D8P
source Swiss-Prot : SWS_FT_FI1

5) chain F
residue 777
type BINDING
sequence L
description BINDING => ECO:0000269|PubMed:27325485, ECO:0000269|PubMed:29996105, ECO:0000312|PDB:5AWH, ECO:0000312|PDB:6D8P
source Swiss-Prot : SWS_FT_FI1


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