|
eF-site ID
|
6d9l-ACFGHJ |
PDB Code
|
6d9l |
Chain
|
A, C, F, G, H, J |
|
click to enlarge
|
|
Title
|
Ternary RsAgo Complex with Guide RNA and Target DNA Containing G-A Non-canonical Pair |
Classification
|
RNA BINDING PROTEIN/RNA/DNA |
Compound
|
Uncharacterized protein |
Source
|
(6D9L) |
|
Sequence
|
A: |
RQLVSNGFEVNLPDQVEVIVRDLPDPSKVKEERTRLMGYW
FVHWFDGKLFHLRIKAGGPNVDGEHRAIRTAEHPWLLRAR
LDDALEEALPKYAAVKKRPFTFLAQKDELIDAAATAAGLS
HRLLNSFKVIPRFALSPKIYEPVDGTTRVGVFVTIGMRYD
IEASLRDLLEAGIDLRGMYVVRRKRQPGERGLLGRVRAIS
DDMVQLFEETDLASVNVNDAKLEGSKENFTRCLSALLGHN
YKKLLNALDDQEAGYRTGPRFDDAVRRMGEFLAKKPIRLA
DNINAQVGDRIVFSNEGQARNVRLAPKVEYVFDRTGAKSA
EYAWRGLSQFGPFDRPSFANRSPRILVVYPSSTQGKVENF
LSAFRDGMGSNYSGFSKGFVDLMGLTKVEFVMCPVEVSSA
DRNGAHTKYNSAIEDKLAGAGEVHAGIVVLFEDHARLPDD
RNPYIHTKSLLLTLGVPTQQVRMPTVLLEPKSLQYTLQNF
SIATYAKLNGTPWTVNHDKAINDELVVGMGLAELSGSRTE
KRQRFVGITTVFAGDGSYLLGNVSKECEYEGYSDAIRESM
TGILRELKKRNNWRPGDTVRVVFHAHRPLKRVDVASIVFE
CTREIGSDQNIQMAFVTVSHDHPFVLIDRSERGLEAYKGS
TARKGVFAPPRGAISRVGRLTRLLAVNSPQLIKRANTPLP
TPLLVSLHPDSTFKDVDYLAEQALKFTSLSWRSTLPAATP
VTIFYSERIAELLGRLKSIPNWSSANLNIKLKWSRWFL
|
C: |
UUACUGCGCAGGUGACGA
|
F: |
RQLVSNGFEVNLPDQVEVIVRDLPDPSKVKEERTRLMGYW
FVHWFDGKLFHLRIKAGGPNVDGEHRAIRTAEHPWLLRAR
LDDALEEALPKYAAVKKRPFTFLAQKDELIDAAATAAGLS
HRLLNSFKVIPRFALSPKIYEPVDGTTRVGVFVTIGMRYD
IEASLRDLLEAGIDLRGMYVVRRKRQPGERGLLGRVRAIS
DDMVQLFEETDLASVNVNDAKLEGSKENFTRCLSALLGHN
YKKLLNALDDQEAGYRTGPRFDDAVRRMGEFLAKKPIRLA
DNINAQVGDRIVFSNEGQARNVRLAPKVEYVFDRTGAKSA
EYAWRGLSQFGPFDRPSFANRSPRILVVYPSSTQGKVENF
LSAFRDGMGSNYSGFSKGFVDLMGLTKVEFVMCPVEVSSA
DRNGAHTKYNSAIEDKLAGAGEVHAGIVVLFEDHARLPDD
RNPYIHTKSLLLTLGVPTQQVRMPTVLLEPKSLQYTLQNF
SIATYAKLNGTPWTVNHDKAINDELVVGMGLAELSGSRTE
KRQRFVGITTVFAGDGSYLLGNVSKECEYEGYSDAIRESM
TGILRELKKRNNWRPGDTVRVVFHAHRPLKRVDVASIVFE
CTREIGSDQNIQMAFVTVSHDHPFVLIDRSERGLEAYKGS
TARKGVFAPPRGAISRVGRLTRLLAVNSPQLIKRANTPLP
TPLLVSLHPDSTFKDVDYLAEQALKFTSLSWRSTLPAATP
VTIFYSERIAELLGRLKSIPNWSSANLNIKLKWSRWFL
|
G: |
TCGTCACCTGAGCAGTAAC
|
H: |
UUACUGCGCAGGUGACGA
|
J: |
GTCGTCACCTGAGCAGTAAC
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
A |
residue |
777 |
type |
|
sequence |
L
|
description |
binding site for residue MG C 101
|
source |
: AC1
|
|
2)
|
chain |
C |
residue |
1 |
type |
|
sequence |
U
|
description |
binding site for residue MG C 101
|
source |
: AC1
|
|
3)
|
chain |
C |
residue |
2 |
type |
|
sequence |
U
|
description |
binding site for residue MG C 101
|
source |
: AC1
|
|
4)
|
chain |
C |
residue |
3 |
type |
|
sequence |
A
|
description |
binding site for residue MG C 101
|
source |
: AC1
|
|
5)
|
chain |
F |
residue |
478 |
type |
|
sequence |
Q
|
description |
binding site for residue MG H 101
|
source |
: AC2
|
|
6)
|
chain |
F |
residue |
777 |
type |
|
sequence |
L
|
description |
binding site for residue MG H 101
|
source |
: AC2
|
|
7)
|
chain |
H |
residue |
1 |
type |
|
sequence |
U
|
description |
binding site for residue MG H 101
|
source |
: AC2
|
|
8)
|
chain |
H |
residue |
2 |
type |
|
sequence |
U
|
description |
binding site for residue MG H 101
|
source |
: AC2
|
|
9)
|
chain |
H |
residue |
3 |
type |
|
sequence |
A
|
description |
binding site for residue MG H 101
|
source |
: AC2
|
|
10)
|
chain |
A |
residue |
777 |
type |
BINDING |
sequence |
L
|
description |
BINDING => ECO:0000269|PubMed:27325485, ECO:0000269|PubMed:29996105, ECO:0000312|PDB:5AWH, ECO:0000312|PDB:6D8P
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
11)
|
chain |
F |
residue |
777 |
type |
BINDING |
sequence |
L
|
description |
BINDING => ECO:0000269|PubMed:27325485, ECO:0000269|PubMed:29996105, ECO:0000312|PDB:5AWH, ECO:0000312|PDB:6D8P
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
|
|