eF-site ID 6d9k-AF
PDB Code 6d9k
Chain A, F

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Title Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair
Classification RNA BINDING PROTEIN/RNA/DNA
Compound Uncharacterized protein
Source (6D9K)
Sequence A:  RQLVSNGFEVNLPDQVEVIVRDLPDPSKVKEERTRLMGYW
FVHWFDGKLFHLRIKAGGPNVDGEHRAIRTAEHPWLLRAR
LDDALEEALPKYAAVKKRPFTFLAQKDELIDAAATAAGLS
HRLLNSFKVIPRFALSPKIYEPVDGTTRVGVFVTIGMRYD
IEASLRDLLEAGIDLRGMYVVRRKRQPGERGLLGRVRAIS
DDMVQLFEETDLASVNVNDAKLEGSKENFTRCLSALLGHN
YKKLLNALDDQEAGYRTGPRFDDAVRRMGEFLAKKPIRLA
DNINAQVGDRIVFSNEGQARNVRLAPKVEYVFDRTGAKSA
EYAWRGLSQFGPFDRPSFANRSPRILVVYPSSTQGKVENF
LSAFRDGMGSNYSGFSKGFVDLMGLTKVEFVMCPVEVSSA
DRNGAHTKYNSAIEDKLAGAGEVHAGIVVLFEDHARLPDD
RNPYIHTKSLLLTLGVPTQQVRMPTVLLEPKSLQYTLQNF
SIATYAKLNGTPWTVNHDKAINDELVVGMGLAELSGSRTE
KRQRFVGITTVFAGDGSYLLGNVSKECEYEGYSDAIRESM
TGILRELKKRNNWRPGDTVRVVFHAHRPLKRVDVASIVFE
CTREIGSDQNIQMAFVTVSHDHPFVLIDRSERGLEAYKGS
TARKGVFAPPRGAISRVGRLTRLLAVNSPQLIKRANTPLP
TPLLVSLHPDSTFKDVDYLAEQALKFTSLSWRSTLPAATP
VTIFYSERIAELLGRLKSIPNWSSANLNIKLKWSRWFL
F:  RQLVSNGFEVNLPDQVEVIVRDLPDPSKVKEERTRLMGYW
FVHWFDGKLFHLRIKAGGPNVDGEHRAIRTAEHPWLLRAR
LDDALEEALPKYAAVKKRPFTFLAQKDELIDAAATAAGLS
HRLLNSFKVIPRFALSPKIYEPVDGTTRVGVFVTIGMRYD
IEASLRDLLEAGIDLRGMYVVRRKRQRGLLGRVRAISDDM
VQLFEETDLASVNVNDAKLEGSKENFTRCLSALLGHNYKK
LLNALDDQEAGYRTGPRFDDAVRRMGEFLAKKPIRLADNI
NAQVGDRIVFSNEGQARNVRLAPKVEYVFDRTGAKSAEYA
WRGLSQFGPFDRPSFANRSPRILVVYPSSTQGKVENFLSA
FRDGMGSNYSGFSKGFVDLMGLTKVEFVMCPVEVSSADRN
GAHTKYNSAIEDKLAGAGEVHAGIVVLFEDHARLPDDRNP
YIHTKSLLLTLGVPTQQVRMPTVLLEPKSLQYTLQNFSIA
TYAKLNGTPWTVNHDKAINDELVVGMGLAELSGSRTEKRQ
RFVGITTVFAGDGSYLLGNVSKECEYEGYSDAIRESMTGI
LRELKKRNNWRPGDTVRVVFHAHRPLKRVDVASIVFECTR
EIGSDQNIQMAFVTVSHDHPFVLIDRSERGLEAYKGSTAR
KGVFAPPRGAISRVGRLTRLLAVNSPQLIKRANTPLPTPL
LVSLHPDSTFKDVDYLAEQALKFTSLSWRSTLPAATPVTI
FYSERIAELLGRLKSIPNWSSANLNIKLKWSRWFL
Description


Functional site

1) chain A
residue 111
type
sequence Y
description binding site for residue ACT A 801
source : AC1

2) chain A
residue 377
type
sequence E
description binding site for residue MPD A 802
source : AC2

3) chain A
residue 384
type
sequence R
description binding site for residue MPD A 802
source : AC2

4) chain A
residue 777
type
sequence L
description binding site for residue MG C 101
source : AC3

5) chain F
residue 377
type
sequence E
description binding site for residue ACT F 801
source : AC4

6) chain F
residue 384
type
sequence R
description binding site for residue ACT F 801
source : AC4

7) chain F
residue 604
type
sequence A
description binding site for residue ACT F 802
source : AC5

8) chain F
residue 608
type
sequence L
description binding site for residue ACT F 802
source : AC5

9) chain F
residue 777
type
sequence L
description binding site for residue MG H 101
source : AC6

10) chain A
residue 777
type BINDING
sequence L
description BINDING => ECO:0000269|PubMed:27325485, ECO:0000269|PubMed:29996105, ECO:0000312|PDB:5AWH, ECO:0000312|PDB:6D8P
source Swiss-Prot : SWS_FT_FI1

11) chain F
residue 777
type BINDING
sequence L
description BINDING => ECO:0000269|PubMed:27325485, ECO:0000269|PubMed:29996105, ECO:0000312|PDB:5AWH, ECO:0000312|PDB:6D8P
source Swiss-Prot : SWS_FT_FI1


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