eF-site ID 6cwy-D
PDB Code 6cwy
Chain D

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Title Crystal structure of SUMO E1 in complex with an allosteric inhibitor
Classification transferase/transferase inhibitor
Compound SUMO-activating enzyme subunit 1
Source (SAE2_HUMAN)
Sequence D:  LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS
HIDLIDLDTIDGRSKAQVAKESVLQFYPKANIVAYHDSIM
NPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLI
ESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRN
TPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAW
EPTEAEAISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMD
KLWRKRKPPVPLDWAEVQSQLDVKSYARLFSKSIETLRVH
LIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAG
NIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQ
PNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTV
LTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEAN
NHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKD
VEFEVVG
Description


Functional site

1) chain D
residue 158
type
sequence C
description binding site for residue ZN D 701
source : AC3

2) chain D
residue 161
type
sequence C
description binding site for residue ZN D 701
source : AC3

3) chain D
residue 441
type
sequence C
description binding site for residue ZN D 701
source : AC3

4) chain D
residue 444
type
sequence C
description binding site for residue ZN D 701
source : AC3

5) chain D
residue 96
type
sequence I
description binding site for residue MG D 702
source : AC4

6) chain D
residue 98
type
sequence N
description binding site for residue MG D 702
source : AC4

7) chain D
residue 101
type
sequence Y
description binding site for residue MG D 702
source : AC4

8) chain D
residue 124
type
sequence H
description binding site for residue MG D 702
source : AC4

9) chain D
residue 176
type
sequence R
description binding site for residue SO4 D 703
source : AC5

10) chain D
residue 205
type
sequence E
description binding site for residue SO4 D 703
source : AC5

11) chain D
residue 208
type
sequence P
description binding site for residue SO4 D 703
source : AC5

12) chain D
residue 209
type
sequence D
description binding site for residue SO4 D 703
source : AC5

13) chain D
residue 210
type
sequence R
description binding site for residue SO4 D 703
source : AC5

14) chain D
residue 211
type
sequence A
description binding site for residue SO4 D 703
source : AC5

15) chain D
residue 119
type
sequence R
description binding site for residue SO4 D 704
source : AC6

16) chain D
residue 165
type
sequence P
description binding site for residue SO4 D 704
source : AC6

17) chain D
residue 166
type
sequence T
description binding site for residue SO4 D 704
source : AC6

18) chain D
residue 168
type
sequence R
description binding site for residue SO4 D 704
source : AC6

19) chain D
residue 378
type
sequence S
description binding site for residue SO4 D 704
source : AC6

20) chain D
residue 74
type
sequence Q
description binding site for residue SO4 D 705
source : AC7

21) chain D
residue 77
type
sequence K
description binding site for residue SO4 D 705
source : AC7

22) chain D
residue 91
type
sequence A
description binding site for residue SO4 D 705
source : AC7

23) chain D
residue 417
type
sequence F
description binding site for residue SO4 D 706
source : AC8

24) chain D
residue 419
type
sequence N
description binding site for residue SO4 D 706
source : AC8

25) chain D
residue 430
type
sequence V
description binding site for residue SO4 D 706
source : AC8

26) chain D
residue 30
type
sequence C
description binding site for residue FHJ D 707
source : AC9

27) chain D
residue 31
type
sequence E
description binding site for residue FHJ D 707
source : AC9

28) chain D
residue 34
type
sequence K
description binding site for residue FHJ D 707
source : AC9

29) chain D
residue 76
type
sequence A
description binding site for residue FHJ D 707
source : AC9

30) chain D
residue 79
type
sequence S
description binding site for residue FHJ D 707
source : AC9

31) chain D
residue 80
type
sequence V
description binding site for residue FHJ D 707
source : AC9

32) chain D
residue 83
type
sequence F
description binding site for residue FHJ D 707
source : AC9

33) chain D
residue 173
type ACT_SITE
sequence C
description Glycyl thioester intermediate => ECO:0000255|PROSITE-ProRule:PRU10132, ECO:0000269|PubMed:15660128, ECO:0000269|PubMed:20164921
source Swiss-Prot : SWS_FT_FI1

34) chain D
residue 190
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
source Swiss-Prot : SWS_FT_FI10

35) chain D
residue 275
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)
source Swiss-Prot : SWS_FT_FI10

36) chain D
residue 24
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

37) chain D
residue 48
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

38) chain D
residue 72
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

39) chain D
residue 95
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

40) chain D
residue 117
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:15660128
source Swiss-Prot : SWS_FT_FI2

41) chain D
residue 158
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI3

42) chain D
residue 161
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI3

43) chain D
residue 441
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI3

44) chain D
residue 444
type BINDING
sequence C
description
source Swiss-Prot : SWS_FT_FI3

45) chain D
residue 271
type MOD_RES
sequence K
description N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI5

46) chain D
residue 207
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:24275569
source Swiss-Prot : SWS_FT_FI4

47) chain D
residue 257
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI12

48) chain D
residue 420
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI12

49) chain D
residue 271
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO); alternate
source Swiss-Prot : SWS_FT_FI13

50) chain D
residue 371
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI14

51) chain D
residue 540
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI14

52) chain D
residue 507
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI6

53) chain D
residue 164
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1) => ECO:0007744|PubMed:25114211
source Swiss-Prot : SWS_FT_FI9

54) chain D
residue 404-412
type prosite
sequence KILSGKIDQ
description UBIQUITIN_ACTIVAT_1 Ubiquitin-activating enzyme signature 1. KILSGKIdQ
source prosite : PS00536

55) chain D
residue 171-179
type prosite
sequence PGCTIRNTP
description UBIQUITIN_ACTIVAT_2 Ubiquitin-activating enzyme active site. PGCTIRnTP
source prosite : PS00865


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