eF-site ID 6crx-ABC
PDB Code 6crx
Chain A, B, C

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Title SARS Spike Glycoprotein, Stabilized variant, two S1 CTDs in the upwards conformation
Classification VIRAL PROTEIN
Compound Spike glycoprotein,Fibritin
Source (D9IEJ2_BPT4)
Sequence A:  RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQD
LFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNV
VRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPF
FAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSG
NFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK
PIFKLPLGINITNFRAILTAFSPIWGTSAAAYFVGYLKPT
TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY
QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAW
ERKKISNCVADYSVLYNSTFFSTFKCYATKLNDLCFSNVY
ADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAW
NTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD
GKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFET
VCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQ
QFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTN
ASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVF
QTQAGCLIGAEHVDTSYECDIPIGAGICASYHTKSIVAYT
MSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSV
DCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR
NTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRS
FIEDLLFNKVTQYGECLICAQKFNGLTVLPPLLTDDMIAA
YTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVT
QNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV
NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQ
IDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC
VLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQE
RNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSP
QIITTDNTFVSGNCDVVIGIINNTVY
B:  RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQD
LFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNV
VRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPF
FAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSG
NFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK
PIFKLPLGINITNFRAILTAFSPIWGTSAAAYFVGYLKPT
TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY
QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAW
ERKKISNCVADYSVLYNSTFFSTFKCYATKLNDLCFSNVY
ADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAW
NTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD
GKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFET
VCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQ
QFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTN
ASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVF
QTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVKSIVAY
TMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS
VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQD
RNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKR
SFIEDLLFNKVTQYGECLLICAQKFNGLTVLPPLLTDDMI
AAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIG
VTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQD
VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAE
VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS
ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPS
QERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFF
SPQIITTDNTFVSGNCDVVIGIINNTVY
C:  RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQD
LFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNV
VRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPF
FAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSG
NFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK
PIFKLPLGINITNFRAILTAFSPIWGTSAAAYFVGYLKPT
TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIY
QTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAW
ERKKISNCVADYSVLYNSTFFSTFKCYATKLNDLCFSNVY
ADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAW
NTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD
GKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFET
VCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQ
QFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTN
ASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVF
QTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVKSIVAY
TMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS
VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQD
RNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKR
SFIEDLLFNKVTQYGECLGLICAQKFNGLTVLPPLLTDDM
IAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGI
GVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQ
DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEA
EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKM
SECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVP
SQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNF
FSPQIITTDNTFVSGNCDVVIGIINNTVY
Description (1)  Spike glycoprotein,Envelope glycoprotein


Functional site
1) chain B
residue 797
type SITE
sequence R
description Cleavage => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:19321428
source Swiss-Prot : SWS_FT_FI1
2) chain C
residue 797
type SITE
sequence R
description Cleavage => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:19321428
source Swiss-Prot : SWS_FT_FI1
3) chain A
residue 797
type SITE
sequence R
description Cleavage => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:19321428
source Swiss-Prot : SWS_FT_FI1
4) chain B
residue 29
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
5) chain B
residue 318
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
6) chain B
residue 330
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
7) chain B
residue 357
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
8) chain B
residue 589
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
9) chain B
residue 602
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
10) chain B
residue 691
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
11) chain B
residue 699
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
12) chain B
residue 783
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
13) chain B
residue 1056
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
14) chain B
residue 1080
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
15) chain B
residue 65
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
16) chain B
residue 1116
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
17) chain C
residue 29
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
18) chain C
residue 65
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
19) chain C
residue 73
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
20) chain C
residue 109
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
21) chain C
residue 118
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
22) chain C
residue 119
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
23) chain B
residue 73
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
24) chain C
residue 158
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
25) chain C
residue 227
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
26) chain C
residue 269
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
27) chain C
residue 318
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
28) chain C
residue 330
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
29) chain C
residue 357
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
30) chain C
residue 589
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
31) chain C
residue 602
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
32) chain C
residue 691
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
33) chain C
residue 699
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
34) chain B
residue 109
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
35) chain C
residue 783
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
36) chain C
residue 1056
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
37) chain C
residue 1080
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
38) chain C
residue 1116
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
39) chain A
residue 29
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
40) chain A
residue 65
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
41) chain A
residue 73
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
42) chain B
residue 118
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
43) chain A
residue 109
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
44) chain A
residue 118
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
45) chain A
residue 119
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
46) chain A
residue 158
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
47) chain A
residue 227
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
48) chain A
residue 269
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
49) chain A
residue 318
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
50) chain A
residue 330
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
51) chain A
residue 357
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
52) chain A
residue 589
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
53) chain B
residue 119
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
54) chain A
residue 602
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
55) chain A
residue 691
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
56) chain A
residue 699
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
57) chain A
residue 783
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
58) chain A
residue 1056
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
59) chain A
residue 1080
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
60) chain A
residue 1116
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
61) chain B
residue 158
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
62) chain B
residue 227
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2
63) chain B
residue 269
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

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