eF-site ID 6c4j-K
PDB Code 6c4j
Chain K

click to enlarge
Title Ligand bound full length hUGDH with A104L substitution
Classification OXIDOREDUCTASE
Compound UDP-glucose 6-dehydrogenase
Source (UGDH_HUMAN)
Sequence K:  MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES
RINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIK
EADLVFISVNTPTKTYGMGKGRALDLKYIEACARRIVQNS
NGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNP
EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYE
HWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL
CEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKD
VLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIID
SLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE
GAHLHIYDPKVPREQIVVDLSHDQVSRLVTISKDPYEACD
GAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLD
GLHNELQTIGFQIETIGKKV
Description


Functional site

1) chain K
residue 31
type
sequence R
description binding site for residue SO4 D 504
source : AD5

2) chain K
residue 70
type
sequence F
description binding site for residue SO4 D 504
source : AD5

3) chain K
residue 10
type
sequence I
description binding site for residue NAD K 501
source : AG5

4) chain K
residue 11
type
sequence G
description binding site for residue NAD K 501
source : AG5

5) chain K
residue 13
type
sequence G
description binding site for residue NAD K 501
source : AG5

6) chain K
residue 14
type
sequence Y
description binding site for residue NAD K 501
source : AG5

7) chain K
residue 15
type
sequence V
description binding site for residue NAD K 501
source : AG5

8) chain K
residue 36
type
sequence D
description binding site for residue NAD K 501
source : AG5

9) chain K
residue 37
type
sequence V
description binding site for residue NAD K 501
source : AG5

10) chain K
residue 41
type
sequence R
description binding site for residue NAD K 501
source : AG5

11) chain K
residue 88
type
sequence S
description binding site for residue NAD K 501
source : AG5

12) chain K
residue 89
type
sequence V
description binding site for residue NAD K 501
source : AG5

13) chain K
residue 90
type
sequence N
description binding site for residue NAD K 501
source : AG5

14) chain K
residue 91
type
sequence T
description binding site for residue NAD K 501
source : AG5

15) chain K
residue 108
type
sequence Y
description binding site for residue NAD K 501
source : AG5

16) chain K
residue 130
type
sequence S
description binding site for residue NAD K 501
source : AG5

17) chain K
residue 131
type
sequence T
description binding site for residue NAD K 501
source : AG5

18) chain K
residue 161
type
sequence E
description binding site for residue NAD K 501
source : AG5

19) chain K
residue 163
type
sequence L
description binding site for residue NAD K 501
source : AG5

20) chain K
residue 279
type
sequence K
description binding site for residue NAD K 501
source : AG5

21) chain K
residue 162
type
sequence F
description binding site for residue UPG K 502
source : AG6

22) chain K
residue 163
type
sequence L
description binding site for residue UPG K 502
source : AG6

23) chain K
residue 164
type
sequence A
description binding site for residue UPG K 502
source : AG6

24) chain K
residue 165
type
sequence E
description binding site for residue UPG K 502
source : AG6

25) chain K
residue 220
type
sequence K
description binding site for residue UPG K 502
source : AG6

26) chain K
residue 224
type
sequence N
description binding site for residue UPG K 502
source : AG6

27) chain K
residue 231
type
sequence I
description binding site for residue UPG K 502
source : AG6

28) chain K
residue 265
type
sequence F
description binding site for residue UPG K 502
source : AG6

29) chain K
residue 266
type
sequence L
description binding site for residue UPG K 502
source : AG6

30) chain K
residue 267
type
sequence K
description binding site for residue UPG K 502
source : AG6

31) chain K
residue 269
type
sequence S
description binding site for residue UPG K 502
source : AG6

32) chain K
residue 272
type
sequence F
description binding site for residue UPG K 502
source : AG6

33) chain K
residue 273
type
sequence G
description binding site for residue UPG K 502
source : AG6

34) chain K
residue 276
type
sequence C
description binding site for residue UPG K 502
source : AG6

35) chain K
residue 277
type
sequence F
description binding site for residue UPG K 502
source : AG6

36) chain K
residue 338
type
sequence F
description binding site for residue UPG K 502
source : AG6

37) chain K
residue 339
type
sequence K
description binding site for residue UPG K 502
source : AG6

38) chain K
residue 442
type
sequence R
description binding site for residue UPG K 502
source : AG6

39) chain K
residue 56
type
sequence G
description binding site for residue CL K 503
source : AG7

40) chain K
residue 99
type
sequence G
description binding site for residue CL K 504
source : AG8

41) chain K
residue 102
type
sequence R
description binding site for residue CL K 504
source : AG8

42) chain K
residue 135
type
sequence R
description binding site for residue SO4 K 505
source : AG9

43) chain K
residue 214
type
sequence W
description binding site for residue SO4 K 505
source : AG9

44) chain K
residue 162
type
sequence F
description binding site for residue PGO K 506
source : AH1

45) chain K
residue 171
type
sequence D
description binding site for residue PGO K 506
source : AH1

46) chain K
residue 176
type
sequence D
description binding site for residue PGO K 506
source : AH1

47) chain K
residue 260
type
sequence R
description binding site for residue UPG L 502
source : AH3

48) chain K
residue 258
type
sequence D
description binding site for residue PGO L 505
source : AH6

49) chain K
residue 260
type
sequence R
description binding site for residue PGO L 505
source : AH6

50) chain K
residue 346
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445, ECO:0000269|PubMed:21984906, ECO:0000269|PubMed:22123821, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:3TDK
source Swiss-Prot : SWS_FT_FI8

51) chain K
residue 442
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:22123821, ECO:0000269|PubMed:23106432, ECO:0000305|PubMed:21502315, ECO:0000305|PubMed:21595445, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3KHU, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:4EDF
source Swiss-Prot : SWS_FT_FI9

52) chain K
residue 107
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI10

53) chain K
residue 161
type ACT_SITE
sequence E
description Proton donor/acceptor => ECO:0000269|PubMed:22123821
source Swiss-Prot : SWS_FT_FI1

54) chain K
residue 220
type ACT_SITE
sequence K
description Proton donor/acceptor => ECO:0000269|PubMed:22123821
source Swiss-Prot : SWS_FT_FI1

55) chain K
residue 276
type ACT_SITE
sequence C
description Nucleophile => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21984906, ECO:0000269|PubMed:22123821
source Swiss-Prot : SWS_FT_FI2

56) chain K
residue 11
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445, ECO:0000269|PubMed:21984906, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:3TDK
source Swiss-Prot : SWS_FT_FI3

57) chain K
residue 36
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445, ECO:0000269|PubMed:21984906, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:3TDK
source Swiss-Prot : SWS_FT_FI3

58) chain K
residue 41
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445, ECO:0000269|PubMed:21984906, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:3TDK
source Swiss-Prot : SWS_FT_FI3

59) chain K
residue 89
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445, ECO:0000269|PubMed:21984906, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:3TDK
source Swiss-Prot : SWS_FT_FI3

60) chain K
residue 276
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445, ECO:0000269|PubMed:21984906, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:3TDK
source Swiss-Prot : SWS_FT_FI3

61) chain K
residue 130
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445
source Swiss-Prot : SWS_FT_FI4

62) chain K
residue 161
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:23106432, ECO:0000305|PubMed:21502315, ECO:0000305|PubMed:21595445, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:4EDF
source Swiss-Prot : SWS_FT_FI5

63) chain K
residue 220
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:23106432, ECO:0000305|PubMed:21502315, ECO:0000305|PubMed:21595445, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:4EDF
source Swiss-Prot : SWS_FT_FI5

64) chain K
residue 267
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:23106432, ECO:0000305|PubMed:21502315, ECO:0000305|PubMed:21595445, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:4EDF
source Swiss-Prot : SWS_FT_FI5

65) chain K
residue 338
type BINDING
sequence F
description BINDING => ECO:0000269|PubMed:23106432, ECO:0000305|PubMed:21502315, ECO:0000305|PubMed:21595445, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:4EDF
source Swiss-Prot : SWS_FT_FI5

66) chain K
residue 165
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:21502315, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4
source Swiss-Prot : SWS_FT_FI6

67) chain K
residue 260
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:23106432, ECO:0000269|PubMed:27966912, ECO:0000305|PubMed:21502315, ECO:0000305|PubMed:21595445, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:4EDF, ECO:0007744|PDB:5TJH
source Swiss-Prot : SWS_FT_FI7


Display surface

Download
Links