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eF-site ID
|
6c4i-D |
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PDB Code
|
6c4i |
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Chain
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D |
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click to enlarge
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Title
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Conformation of methylated GGQ in the peptidyl transferase center during translation termination |
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Classification
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RIBOSOME |
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Compound
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23S rRNA |
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Source
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ORGANISM_SCIENTIFIC: Escherichia coli; |
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Sequence
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D: |
MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDL
ANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLW
EFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAG
TVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK
MAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSD
LIVKPAVKA
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Description
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(1) |
ribosome
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Functional site
|
|
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1)
|
chain |
D |
| residue |
137 |
| type |
|
| sequence |
S
|
| description |
binding site for residue MG A 3016
|
| source |
: AD2
|
|
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2)
|
chain |
D |
| residue |
129 |
| type |
|
| sequence |
T
|
| description |
binding site for residue MG A 3132
|
| source |
: AO6
|
|
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3)
|
chain |
D |
| residue |
140 |
| type |
|
| sequence |
H
|
| description |
binding site for residue MG D 301
|
| source |
: AY5
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4)
|
chain |
D |
| residue |
115 |
| type |
|
| sequence |
G
|
| description |
binding site for residue MG O 202
|
| source |
: AY7
|
|
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5)
|
chain |
D |
| residue |
101-124 |
| type |
prosite |
| sequence |
FADVKKVDVTGTSKGKGFAGTVKR
|
| description |
RIBOSOMAL_L3 Ribosomal protein L3 signature. FadvkkvDvtGtSkGKGfaGtvkR
|
| source |
prosite : PS00474
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