|
eF-site ID
|
6c4i-C |
PDB Code
|
6c4i |
Chain
|
C |
|
click to enlarge
|
|
Title
|
Conformation of methylated GGQ in the peptidyl transferase center during translation termination |
Classification
|
RIBOSOME |
Compound
|
23S rRNA |
Source
|
ORGANISM_SCIENTIFIC: Escherichia coli; |
|
Sequence
|
C: |
AVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSG
GRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERL
EYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVD
AAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTY
VQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHM
LRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFG
KHPVTPWGVQTKGKKTRSNKRTDKFIVRRRS
|
|
Description
|
(1) |
ribosome
|
|
Functional site
|
|
1)
|
chain |
C |
residue |
224 |
type |
|
sequence |
A
|
description |
binding site for residue MG A 3018
|
source |
: AD4
|
|
2)
|
chain |
C |
residue |
221 |
type |
|
sequence |
R
|
description |
binding site for residue MG A 3084
|
source |
: AK1
|
|
3)
|
chain |
C |
residue |
219 |
type |
|
sequence |
T
|
description |
binding site for residue MG A 3141
|
source |
: AP4
|
|
4)
|
chain |
C |
residue |
221 |
type |
|
sequence |
R
|
description |
binding site for residue MG A 3141
|
source |
: AP4
|
|
5)
|
chain |
C |
residue |
53 |
type |
|
sequence |
H
|
description |
binding site for residue MG C 301
|
source |
: AY4
|
|
6)
|
chain |
C |
residue |
218-229 |
type |
prosite |
sequence |
PTVRGTAMNPVD
|
description |
RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGTAmNPvD
|
source |
prosite : PS00467
|
|
|
|