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eF-site ID
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6c4i-C |
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PDB Code
|
6c4i |
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Chain
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C |
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click to enlarge
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Title
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Conformation of methylated GGQ in the peptidyl transferase center during translation termination |
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Classification
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RIBOSOME |
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Compound
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23S rRNA |
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Source
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ORGANISM_SCIENTIFIC: Escherichia coli; |
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Sequence
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C: |
AVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSG
GRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERL
EYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVD
AAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTY
VQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHM
LRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFG
KHPVTPWGVQTKGKKTRSNKRTDKFIVRRRS
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Description
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(1) |
ribosome
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Functional site
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|
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1)
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chain |
C |
| residue |
224 |
| type |
|
| sequence |
A
|
| description |
binding site for residue MG A 3018
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| source |
: AD4
|
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2)
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chain |
C |
| residue |
221 |
| type |
|
| sequence |
R
|
| description |
binding site for residue MG A 3084
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| source |
: AK1
|
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3)
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chain |
C |
| residue |
219 |
| type |
|
| sequence |
T
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| description |
binding site for residue MG A 3141
|
| source |
: AP4
|
|
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4)
|
chain |
C |
| residue |
221 |
| type |
|
| sequence |
R
|
| description |
binding site for residue MG A 3141
|
| source |
: AP4
|
|
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5)
|
chain |
C |
| residue |
53 |
| type |
|
| sequence |
H
|
| description |
binding site for residue MG C 301
|
| source |
: AY4
|
|
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6)
|
chain |
C |
| residue |
218-229 |
| type |
prosite |
| sequence |
PTVRGTAMNPVD
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| description |
RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGTAmNPvD
|
| source |
prosite : PS00467
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