|
eF-site ID
|
6c4h-CDNXv |
PDB Code
|
6c4h |
Chain
|
C, D, N, X, v |
|
click to enlarge
|
|
Title
|
Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region) |
Classification
|
RIBOSOMAL PROTEIN/RNA |
Compound
|
23S rRNA |
Source
|
ORGANISM_SCIENTIFIC: Escherichia coli; |
|
Sequence
|
C: |
ARWRGVRPTVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGV
QTKGKKT
|
D: |
FAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFK
GKKMAGQ
|
N: |
TEKPLAVRMGKGKGNVE
|
X: |
STRNGRDSEA
|
v: |
INPADLRIDVYRTSGAGGXHVNRTESAVRITHIPTGIVTQ
CQNDRSQHKNKDQAMKQMKAKLY
|
|
Description
|
(1) |
50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L16, 50S ribosomal protein L27, Peptide chain release factor RF2/RNA Complex
|
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Functional site
|
|
1)
|
chain |
C |
residue |
224 |
type |
|
sequence |
A
|
description |
binding site for residue MG A 3025
|
source |
: AE7
|
|
2)
|
chain |
C |
residue |
236 |
type |
|
sequence |
E
|
description |
binding site for residue MG A 3031
|
source |
: AF4
|
|
3)
|
chain |
C |
residue |
218-229 |
type |
prosite |
sequence |
PTVRGTAMNPVD
|
description |
RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGTAmNPvD
|
source |
prosite : PS00467
|
|
4)
|
chain |
v |
residue |
245-261 |
type |
prosite |
sequence |
RTSGAGGXHVNRTESAV
|
description |
RF_PROK_I Prokaryotic-type class I peptide chain release factors signature. RTsGaGGQHVNrteSAV
|
source |
prosite : PS00745
|
|
5)
|
chain |
v |
residue |
252 |
type |
MOD_RES |
sequence |
X
|
description |
N5-methylglutamine => ECO:0000269|PubMed:11118225, ECO:0000269|PubMed:11847124, ECO:0000269|PubMed:28077875
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
6)
|
chain |
N |
residue |
81 |
type |
MOD_RES |
sequence |
R
|
description |
(3R)-3-hydroxyarginine => ECO:0000269|PubMed:23103944
|
source |
Swiss-Prot : SWS_FT_FI2
|
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