eF-site ID 6c4h-Ax
PDB Code 6c4h
Chain A, x

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Title Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)
Classification RIBOSOMAL PROTEIN/RNA
Compound 23S rRNA
Source ORGANISM_SCIENTIFIC: Escherichia coli;
Sequence A:  GAACCGACUAAUXXXGAAAAAUUAGCGGAUGACUUGUGGC
UGGGGGUGAAAGGCCAAUCAACUAUUUAGCACACGGCGGG
XGCUAACGUCCGUCGAAGAUGAAGGAACUAGGCAAAAUGG
UGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCA
CUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCU
XCCCGGUGCCGGCGGUAAACGGCCUAAGGUAGCGAAAXUC
CUUGUCGGGUAAGUUCCGACXUGCACGAAUGGCGUAAUGA
UGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAAC
UCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAG
ACCCCGUXAACCUUUACUAUAGCUUGACUGUCUGGUGGGU
AGUUUGACUGXGGCGGUCUCCUCCUAAAGAGUAACGGAGG
AACGGAUAAAAGGUACUCCGXGGAUAACAGGCXGAUACCG
CCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCAXCUCGXX
GUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGG
GUAUGGCXGUUCGCCAUUUAAAGUGGUACGCGAGCXGGGU
UUAGAACGUCGUGAGACAGUXCGGUCCCUAUCUGCC
x:  CGCGCGCAACCA
Description (1)  50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L16, 50S ribosomal protein L27, Peptide chain release factor RF2/RNA Complex


Functional site

1) chain A
residue 739
type
sequence A
description binding site for residue MG A 3001
source : AC1

2) chain A
residue 1778
type
sequence U
description binding site for residue MG A 3001
source : AC1

3) chain A
residue 1779
type
sequence U
description binding site for residue MG A 3001
source : AC1

4) chain A
residue 1784
type
sequence A
description binding site for residue MG A 3001
source : AC1

5) chain A
residue 740
type
sequence C
description binding site for residue MG A 3002
source : AC2

6) chain A
residue 1783
type
sequence A
description binding site for residue MG A 3002
source : AC2

7) chain A
residue 1784
type
sequence A
description binding site for residue MG A 3002
source : AC2

8) chain A
residue 944
type
sequence C
description binding site for residue MG A 3003
source : AC3

9) chain A
residue 945
type
sequence A
description binding site for residue MG A 3003
source : AC3

10) chain A
residue 946
type
sequence C
description binding site for residue MG A 3003
source : AC3

11) chain A
residue 945
type
sequence A
description binding site for residue MG A 3004
source : AC4

12) chain A
residue 948
type
sequence C
description binding site for residue MG A 3005
source : AC5

13) chain A
residue 962
type
sequence G
description binding site for residue MG A 3005
source : AC5

14) chain A
residue 963
type
sequence U
description binding site for residue MG A 3005
source : AC5

15) chain A
residue 1664
type
sequence A
description binding site for residue MG A 3006
source : AC6

16) chain A
residue 1665
type
sequence A
description binding site for residue MG A 3006
source : AC6

17) chain A
residue 1992
type
sequence G
description binding site for residue MG A 3006
source : AC6

18) chain A
residue 1670
type
sequence C
description binding site for residue MG A 3007
source : AC7

19) chain A
residue 1671
type
sequence U
description binding site for residue MG A 3007
source : AC7

20) chain A
residue 1672
type
sequence A
description binding site for residue MG A 3008
source : AC8

21) chain A
residue 1673
type
sequence G
description binding site for residue MG A 3008
source : AC8

22) chain A
residue 2552
type
sequence X
description binding site for residue MG A 3008
source : AC8

23) chain A
residue 1676
type
sequence A
description binding site for residue MG A 3009
source : AC9

24) chain A
residue 1678
type
sequence A
description binding site for residue MG A 3010
source : AD1

25) chain A
residue 1780
type
sequence A
description binding site for residue MG A 3011
source : AD2

26) chain A
residue 1782
type
sequence U
description binding site for residue MG A 3011
source : AD2

27) chain A
residue 1783
type
sequence A
description binding site for residue MG A 3011
source : AD2

28) chain A
residue 1938
type
sequence A
description binding site for residue MG A 3012
source : AD3

29) chain A
residue 1835
type
sequence X
description binding site for residue MG A 3013
source : AD4

30) chain A
residue 1900
type
sequence A
description binding site for residue MG A 3013
source : AD4

31) chain A
residue 1970
type
sequence A
description binding site for residue MG A 3013
source : AD4

32) chain A
residue 2028
type
sequence U
description binding site for residue MG A 3014
source : AD5

33) chain A
residue 2033
type
sequence A
description binding site for residue MG A 3014
source : AD5

34) chain A
residue 2056
type
sequence G
description binding site for residue MG A 3015
source : AD6

35) chain A
residue 2057
type
sequence G
description binding site for residue MG A 3015
source : AD6

36) chain A
residue 2061
type
sequence G
description binding site for residue MG A 3016
source : AD7

37) chain A
residue 2502
type
sequence G
description binding site for residue MG A 3016
source : AD7

38) chain A
residue 2074
type
sequence U
description binding site for residue MG A 3017
source : AD8

39) chain A
residue 2239
type
sequence G
description binding site for residue MG A 3017
source : AD8

40) chain A
residue 2066
type
sequence C
description binding site for residue MG A 3018
source : AD9

41) chain A
residue 2248
type
sequence C
description binding site for residue MG A 3018
source : AD9

42) chain A
residue 2249
type
sequence U
description binding site for residue MG A 3018
source : AD9

43) chain A
residue 2447
type
sequence G
description binding site for residue MG A 3019
source : AE1

44) chain A
residue 2448
type
sequence A
description binding site for residue MG A 3019
source : AE1

45) chain A
residue 2497
type
sequence A
description binding site for residue MG A 3019
source : AE1

46) chain A
residue 2498
type
sequence X
description binding site for residue MG A 3019
source : AE1

47) chain A
residue 2499
type
sequence C
description binding site for residue MG A 3019
source : AE1

48) chain A
residue 2448
type
sequence A
description binding site for residue MG A 3020
source : AE2

49) chain A
residue 2499
type
sequence C
description binding site for residue MG A 3020
source : AE2

50) chain A
residue 2518
type
sequence A
description binding site for residue MG A 3021
source : AE3

51) chain A
residue 2052
type
sequence A
description binding site for residue MG A 3022
source : AE4

52) chain A
residue 2053
type
sequence G
description binding site for residue MG A 3022
source : AE4

53) chain A
residue 2575
type
sequence C
description binding site for residue MG A 3022
source : AE4

54) chain A
residue 2576
type
sequence G
description binding site for residue MG A 3022
source : AE4

55) chain A
residue 2577
type
sequence A
description binding site for residue MG A 3022
source : AE4

56) chain A
residue 2581
type
sequence G
description binding site for residue MG A 3023
source : AE5

57) chain A
residue 2582
type
sequence G
description binding site for residue MG A 3023
source : AE5

58) chain A
residue 2583
type
sequence G
description binding site for residue MG A 3023
source : AE5

59) chain A
residue 784
type
sequence G
description binding site for residue MG A 3024
source : AE6

60) chain A
residue 2588
type
sequence G
description binding site for residue MG A 3024
source : AE6

61) chain A
residue 783
type
sequence A
description binding site for residue MG A 3025
source : AE7

62) chain A
residue 784
type
sequence G
description binding site for residue MG A 3025
source : AE7

63) chain A
residue 2589
type
sequence A
description binding site for residue MG A 3025
source : AE7

64) chain A
residue 963
type
sequence U
description binding site for residue MG A 3026
source : AE8

65) chain A
residue 1776
type
sequence G
description binding site for residue MG A 3027
source : AE9

66) chain A
residue 1970
type
sequence A
description binding site for residue MG A 3028
source : AF1

67) chain A
residue 1971
type
sequence U
description binding site for residue MG A 3028
source : AF1

68) chain A
residue 2025
type
sequence C
description binding site for residue MG A 3029
source : AF2

69) chain A
residue 2270
type
sequence A
description binding site for residue MG A 3030
source : AF3

70) chain A
residue 2272
type
sequence U
description binding site for residue MG A 3030
source : AF3

71) chain A
residue 2588
type
sequence G
description binding site for residue MG A 3031
source : AF4

72) chain A
residue 2506
type
sequence U
description binding site for residue MG A 3032
source : AF5

73) chain A
residue 2507
type
sequence C
description binding site for residue MG A 3032
source : AF5

74) chain A
residue 2576
type
sequence G
description binding site for residue MG A 3032
source : AF5

75) chain A
residue 787
type
sequence C
description binding site for residue MG A 3034
source : AF6

76) chain A
residue 790
type
sequence U
description binding site for residue MG A 3034
source : AF6

77) chain A
residue 791
type
sequence C
description binding site for residue MG A 3034
source : AF6


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