eF-site ID 6c06-F
PDB Code 6c06
Chain F

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Title Mycobacterium tuberculosis RNAP Holo/RbpA/Fidaxomicin
Classification transcription/antibiotic
Compound DNA-directed RNA polymerase subunit alpha
Source Mycobacterium tuberculosis (A0A045IP01_MYCTX)
Sequence F:  FVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALL
NAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDM
MWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLI
QEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD
QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAK
EMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIED
SEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGL
TDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ
VLRDYL
Description


Functional site

1) chain F
residue 319-332
type prosite
sequence DLIQEGNLGLIRAV
description SIGMA70_1 Sigma-70 factors family signature 1. DLIQeGnLGLIrAV
source prosite : PS00715

2) chain F
residue 488-514
type prosite
sequence TLDEIGQVYGVTRERIRQIESKTMSKL
description SIGMA70_2 Sigma-70 factors family signature 2. TldEIGqvygVTrerIrQIEsktMskL
source prosite : PS00716

3) chain F
residue 295-302
type prosite
sequence LLEANLRL
description CPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. LLEANLRL
source prosite : PS00867

4) chain F
residue 489-508
type DNA_BIND
sequence LDEIGQVYGVTRERIRQIES
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1


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