eF-site ID 6c06-C
PDB Code 6c06
Chain C

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Title Mycobacterium tuberculosis RNAP Holo/RbpA/Fidaxomicin
Classification transcription/antibiotic
Compound DNA-directed RNA polymerase subunit alpha
Source Mycobacterium tuberculosis (A0A045IP01_MYCTX)
Sequence C:  NSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPR
WRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSD
PRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKS
QTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE
TIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRK
RRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVG
TDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA
RVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLH
EGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQI
RVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE
FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAG
LEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPF
GFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPID
ADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSV
ATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTG
MELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRT
YRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTD
DGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTS
IHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGI
VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKA
REVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELV
RVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLAD
GTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAA
KGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGLL
SCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMY
IMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG
EMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG
ENIPEPGIPESFKVLLKELQSLCLNVEVLSS
Description


Functional site

1) chain C
residue 1051
type
sequence M
description binding site for residue FI8 D 1404
source : AC4

2) chain C
residue 1052
type
sequence I
description binding site for residue FI8 D 1404
source : AC4

3) chain C
residue 1053
type
sequence T
description binding site for residue FI8 D 1404
source : AC4

4) chain C
residue 1054
type
sequence Q
description binding site for residue FI8 D 1404
source : AC4

5) chain C
residue 1094
type
sequence D
description binding site for residue FI8 D 1404
source : AC4

6) chain C
residue 1096
type
sequence T
description binding site for residue FI8 D 1404
source : AC4

7) chain C
residue 1119
type
sequence E
description binding site for residue FI8 D 1404
source : AC4

8) chain C
residue 1120
type
sequence S
description binding site for residue FI8 D 1404
source : AC4

9) chain C
residue 882-894
type prosite
sequence GDKLAGRHGNKGV
description RNA_POL_BETA RNA polymerases beta chain signature. GdKLAGrHGNKGV
source prosite : PS01166


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