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eF-site ID
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6c04-F |
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PDB Code
|
6c04 |
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Chain
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F |
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click to enlarge
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Title
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Mtb RNAP Holo/RbpA/double fork DNA -closed clamp |
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Classification
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transcription/dna |
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Compound
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DNA-directed RNA polymerase subunit alpha |
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Source
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(6C04) |
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Sequence
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F: |
SEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE
LAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDG
DRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGL
IRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRI
PVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPE
KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAV
DAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRT
LDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL
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Description
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Functional site
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|
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1)
|
chain |
F |
| residue |
319-332 |
| type |
prosite |
| sequence |
DLIQEGNLGLIRAV
|
| description |
SIGMA70_1 Sigma-70 factors family signature 1. DLIQeGnLGLIrAV
|
| source |
prosite : PS00715
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2)
|
chain |
F |
| residue |
488-514 |
| type |
prosite |
| sequence |
TLDEIGQVYGVTRERIRQIESKTMSKL
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| description |
SIGMA70_2 Sigma-70 factors family signature 2. TldEIGqvygVTrerIrQIEsktMskL
|
| source |
prosite : PS00716
|
|
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3)
|
chain |
F |
| residue |
295-302 |
| type |
prosite |
| sequence |
LLEANLRL
|
| description |
CPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. LLEANLRL
|
| source |
prosite : PS00867
|
|
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4)
|
chain |
F |
| residue |
489-508 |
| type |
DNA_BIND |
| sequence |
LDEIGQVYGVTRERIRQIES
|
| description |
H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
|
| source |
Swiss-Prot : SWS_FT_FI1
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