eF-site ID 6c04-C
PDB Code 6c04
Chain C

click to enlarge
Title Mtb RNAP Holo/RbpA/double fork DNA -closed clamp
Classification transcription/dna
Compound DNA-directed RNA polymerase subunit alpha
Source (6C04)
Sequence C:  NSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPR
WRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSD
PRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKS
QTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE
TIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRK
RRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVG
TDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA
RVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLH
EGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQI
RVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE
FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAG
LEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPF
GFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPID
ADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSV
ATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTG
MELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRT
YRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTD
DGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTS
IHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGI
VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKA
REVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELV
RVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLAD
GTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAA
KGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGLL
SCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMY
IMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG
EMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG
ENIPEPGIPESFKVLLKELQSLCLNVEVLSS
Description


Functional site

1) chain C
residue 882-894
type prosite
sequence GDKLAGRHGNKGV
description RNA_POL_BETA RNA polymerases beta chain signature. GdKLAGrHGNKGV
source prosite : PS01166


Display surface

Download
Links