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eF-site ID
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6c04-C |
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PDB Code
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6c04 |
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Chain
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C |
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click to enlarge
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Title
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Mtb RNAP Holo/RbpA/double fork DNA -closed clamp |
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Classification
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transcription/dna |
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Compound
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DNA-directed RNA polymerase subunit alpha |
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Source
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(6C04) |
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Sequence
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C: |
NSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPR
WRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSD
PRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKS
QTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE
TIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRK
RRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVG
TDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA
RVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLH
EGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQI
RVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE
FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAG
LEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPF
GFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPID
ADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSV
ATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTG
MELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRT
YRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTD
DGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTS
IHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGI
VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKA
REVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELV
RVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLAD
GTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAA
KGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGLL
SCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMY
IMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG
EMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG
ENIPEPGIPESFKVLLKELQSLCLNVEVLSS
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Description
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Functional site
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1)
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chain |
C |
| residue |
882-894 |
| type |
prosite |
| sequence |
GDKLAGRHGNKGV
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| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKLAGrHGNKGV
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| source |
prosite : PS01166
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