eF-site ID 6bw5-A
PDB Code 6bw5
Chain A

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Title Human GPT (DPAGT1) in complex with tunicamycin
Classification TRANSFERASE/ANTIBIOTIC
Compound UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
Source (GPT_HUMAN)
Sequence A:  PMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLN
KTSRQQIPESQGVISGAVFLIILFCFIPFPFLNCAFPHHE
FVALIGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASL
PLLMVYFTNFGNTTIHLDLGILYYVYMGLLAVFCTNAINI
LAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLY
FMIPFFFTTLGLLYHNWYPSRVFVGDTFCYFAGMTFAVVG
ILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCPRHRIPR
LNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQLVTVH
QSETEDGEFTECNNMTLINLLLKVLGPIHERNLTLLLLLL
QILGSAITFSIRYQLVRL
Description


Functional site

1) chain A
residue 44
type
sequence Q
description binding site for residue TUM A 501
source : AC1

2) chain A
residue 45
type
sequence D
description binding site for residue TUM A 501
source : AC1

3) chain A
residue 46
type
sequence L
description binding site for residue TUM A 501
source : AC1

4) chain A
residue 56
type
sequence E
description binding site for residue TUM A 501
source : AC1

5) chain A
residue 119
type
sequence N
description binding site for residue TUM A 501
source : AC1

6) chain A
residue 122
type
sequence W
description binding site for residue TUM A 501
source : AC1

7) chain A
residue 125
type
sequence K
description binding site for residue TUM A 501
source : AC1

8) chain A
residue 126
type
sequence L
description binding site for residue TUM A 501
source : AC1

9) chain A
residue 182
type
sequence N
description binding site for residue TUM A 501
source : AC1

10) chain A
residue 185
type
sequence N
description binding site for residue TUM A 501
source : AC1

11) chain A
residue 186
type
sequence I
description binding site for residue TUM A 501
source : AC1

12) chain A
residue 188
type
sequence A
description binding site for residue TUM A 501
source : AC1

13) chain A
residue 189
type
sequence G
description binding site for residue TUM A 501
source : AC1

14) chain A
residue 190
type
sequence I
description binding site for residue TUM A 501
source : AC1

15) chain A
residue 191
type
sequence N
description binding site for residue TUM A 501
source : AC1

16) chain A
residue 252
type
sequence D
description binding site for residue TUM A 501
source : AC1

17) chain A
residue 286
type
sequence F
description binding site for residue TUM A 501
source : AC1

18) chain A
residue 302
type
sequence H
description binding site for residue TUM A 501
source : AC1

19) chain A
residue 303
type
sequence R
description binding site for residue TUM A 501
source : AC1

20) chain A
residue 304
type
sequence I
description binding site for residue TUM A 501
source : AC1

21) chain A
residue 107
type
sequence C
description binding site for residue PGW A 502
source : AC2

22) chain A
residue 110
type
sequence F
description binding site for residue PGW A 502
source : AC2

23) chain A
residue 111
type
sequence L
description binding site for residue PGW A 502
source : AC2

24) chain A
residue 114
type
sequence A
description binding site for residue PGW A 502
source : AC2

25) chain A
residue 124
type
sequence H
description binding site for residue PGW A 502
source : AC2

26) chain A
residue 31
type
sequence A
description binding site for residue PGW B 502
source : AC4

27) chain A
residue 35
type
sequence H
description binding site for residue PGW B 502
source : AC4

28) chain A
residue 68
type
sequence I
description binding site for residue PGW B 502
source : AC4

29) chain A
residue 79-91
type TOPO_DOM
sequence LNCAFP
description Lumenal => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI1

30) chain A
residue 144-166
type TOPO_DOM
sequence FGNTTIHLDLG
description Lumenal => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI1

31) chain A
residue 214-218
type TOPO_DOM
sequence EGDCR
description Lumenal => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI1

32) chain A
residue 270-271
type TOPO_DOM
sequence HF
description Lumenal => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI1

33) chain A
residue 251-269
type TRANSMEM
sequence GDTFCYFAGMTFAVVGILG
description Helical; Name=Helix 8 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI10

34) chain A
residue 272-293
type TRANSMEM
sequence SKTMLLFFMPQVFNFLYSLPQL
description Helical; Name=Helix 9 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI11

35) chain A
residue 376-400
type TRANSMEM
sequence ERNLTLLLLLLQILGSAITFSIRYQ
description Helical; Name=Helix 10 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI12

36) chain A
residue 44
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:30388443
source Swiss-Prot : SWS_FT_FI13

37) chain A
residue 56
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:30388443
source Swiss-Prot : SWS_FT_FI13

38) chain A
residue 191
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:30388443
source Swiss-Prot : SWS_FT_FI13

39) chain A
residue 301
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:30388443
source Swiss-Prot : SWS_FT_FI13

40) chain A
residue 46
type BINDING
sequence L
description BINDING => ECO:0000269|PubMed:29459785, ECO:0007744|PDB:6BW5, ECO:0007744|PDB:6BW6
source Swiss-Prot : SWS_FT_FI14

41) chain A
residue 303
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:29459785, ECO:0007744|PDB:6BW5, ECO:0007744|PDB:6BW6
source Swiss-Prot : SWS_FT_FI14

42) chain A
residue 119
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:29459785, ECO:0007744|PDB:6BW5
source Swiss-Prot : SWS_FT_FI15

43) chain A
residue 252
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:29459785, ECO:0007744|PDB:6BW5
source Swiss-Prot : SWS_FT_FI15

44) chain A
residue 125
type BINDING
sequence K
description BINDING => ECO:0000305|PubMed:30388443
source Swiss-Prot : SWS_FT_FI16

45) chain A
residue 178
type BINDING
sequence V
description BINDING => ECO:0000305|PubMed:30388443
source Swiss-Prot : SWS_FT_FI16

46) chain A
residue 185
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:29459785, ECO:0007744|PDB:6BW6
source Swiss-Prot : SWS_FT_FI17

47) chain A
residue 146
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI18

48) chain A
residue 11-38
type TRANSMEM
sequence LLINLIVSLLGFVATVTLIPAFRGHFIA
description Helical; Name=Helix 1 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI2

49) chain A
residue 39-58
type TOPO_DOM
sequence ARLCGQDLNKTSRQQIPESQ
description Cytoplasmic => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI3

50) chain A
residue 119-121
type TOPO_DOM
sequence NLR
description Cytoplasmic => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI3

51) chain A
residue 187-192
type TOPO_DOM
sequence LAGING
description Cytoplasmic => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI3

52) chain A
residue 243-250
type TOPO_DOM
sequence WYPSRVFV
description Cytoplasmic => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI3

53) chain A
residue 294-375
type TOPO_DOM
sequence LHIIPCPRHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFI
LKVAESLQLVTVHQSETEDGEFTECNNMTLINLLLKVLGP
IH
description Cytoplasmic => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI3

54) chain A
residue 59-78
type TRANSMEM
sequence GVISGAVFLIILFCFIPFPF
description Helical; Name=Helix 2 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI4

55) chain A
residue 92-118
type TRANSMEM
sequence HHEFVALIGALLAICCMIFLGFADDVL
description Helical; Name=Helix 3 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI5

56) chain A
residue 122-143
type TRANSMEM
sequence WRHKLLLPTAASLPLLMVYFTN
description Helical; Name=Helix 4 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI6

57) chain A
residue 167-186
type TRANSMEM
sequence ILYYVYMGLLAVFCTNAINI
description Helical; Name=Helix 5 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI7

58) chain A
residue 193-213
type TRANSMEM
sequence LEAGQSLVISASIIVFNLVEL
description Helical; Name=Helix 6 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI8

59) chain A
residue 219-242
type TRANSMEM
sequence DDHVFSLYFMIPFFFTTLGLLYHN
description Helical; Name=Helix 7 => ECO:0000269|PubMed:29459785
source Swiss-Prot : SWS_FT_FI9


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