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eF-site ID
|
6bqf-C |
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PDB Code
|
6bqf |
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Chain
|
C |
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click to enlarge
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Title
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Pol II elongation complex with 'dT-AP' at i+1, i-1 position |
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Classification
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TRANSFERASE/TRANSCRIPTION |
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Compound
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DNA-directed RNA polymerase II subunit RPB1 |
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Source
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(6BQF) |
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Sequence
|
C: |
EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIP
TLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEY
SRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVS
NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKG
IAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWP
QSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQ
VVVRGIDTLQKKVASILLALTQMDQD
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Description
|
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Functional site
|
|
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1)
|
chain |
C |
| residue |
86 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN C 401
|
| source |
: AC5
|
|
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2)
|
chain |
C |
| residue |
88 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN C 401
|
| source |
: AC5
|
|
|
3)
|
chain |
C |
| residue |
92 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN C 401
|
| source |
: AC5
|
|
|
4)
|
chain |
C |
| residue |
95 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN C 401
|
| source |
: AC5
|
|
|
5)
|
chain |
C |
| residue |
31-71 |
| type |
prosite |
| sequence |
NSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLI
P
|
| description |
RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
|
| source |
prosite : PS00446
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