eF-site ID 6bqf-A PDB Code 6bqf Chain A click to enlarge Title Pol II elongation complex with 'dT-AP' at i+1, i-1 position Classification TRANSFERASE/TRANSCRIPTION Compound DNA-directed RNA polymerase II subunit RPB1 Source (6BQF) Sequence A:  GQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMD ETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFG HIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM RQALAIKDSKKRFAAIWTLCKTKMVCGGCGNTQPTIRKDG LKLVGSWVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEW MILTCLPVPPPPVRPSIEDDLTFKLADILKANISLETLEH NGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRP VKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLEL DQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG AKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDP VLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNAD FDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCM GIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIP TPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPK DNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQV CAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITE TIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRF LNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQM SACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVE NSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL VKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQ SLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILG DLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIR RIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQA FDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTK VTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKL IRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLH FSQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDL FVIWSEDNDEKLIIRCRVVAEEDHMLKKIENTMLENITLR GVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLS EVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNT GALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMA PIGTGAFDVMID Description Functional site 1) chain A residue 107 type sequence C description binding site for residue ZN A 1801 source : AC1 2) chain A residue 108 type sequence M description binding site for residue ZN A 1801 source : AC1 3) chain A residue 110 type sequence C description binding site for residue ZN A 1801 source : AC1 4) chain A residue 148 type sequence C description binding site for residue ZN A 1801 source : AC1 5) chain A residue 167 type sequence C description binding site for residue ZN A 1801 source : AC1 6) chain A residue 67 type sequence C description binding site for residue ZN A 1802 source : AC2 7) chain A residue 70 type sequence C description binding site for residue ZN A 1802 source : AC2 8) chain A residue 77 type sequence C description binding site for residue ZN A 1802 source : AC2 9) chain A residue 80 type sequence H description binding site for residue ZN A 1802 source : AC2 10) chain A residue 481 type sequence D description binding site for residue MG A 1803 source : AC3 11) chain A residue 483 type sequence D description binding site for residue MG A 1803 source : AC3 12) chain A residue 485 type sequence D description binding site for residue MG A 1803 source : AC3 13) chain A residue 483 type catalytic sequence D description 788 source MCSA : MCSA1 14) chain A residue 485 type catalytic sequence D description 788 source MCSA : MCSA1 15) chain A residue 483 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1 16) chain A residue 485 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1 17) chain A residue 107 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 18) chain A residue 110 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 19) chain A residue 148 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 20) chain A residue 167 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 21) chain A residue 481 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1

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