|
eF-site ID
|
6bqf-C |
PDB Code
|
6bqf |
Chain
|
C |
|
click to enlarge
|
|
Title
|
Pol II elongation complex with 'dT-AP' at i+1, i-1 position |
Classification
|
TRANSFERASE/TRANSCRIPTION |
Compound
|
DNA-directed RNA polymerase II subunit RPB1 |
Source
|
(6BQF) |
|
Sequence
|
C: |
EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIP
TLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEY
SRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVS
NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKG
IAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWP
QSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQ
VVVRGIDTLQKKVASILLALTQMDQD
|
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Description
|
|
Functional site
|
|
1)
|
chain |
C |
residue |
86 |
type |
|
sequence |
C
|
description |
binding site for residue ZN C 401
|
source |
: AC5
|
|
2)
|
chain |
C |
residue |
88 |
type |
|
sequence |
C
|
description |
binding site for residue ZN C 401
|
source |
: AC5
|
|
3)
|
chain |
C |
residue |
92 |
type |
|
sequence |
C
|
description |
binding site for residue ZN C 401
|
source |
: AC5
|
|
4)
|
chain |
C |
residue |
95 |
type |
|
sequence |
C
|
description |
binding site for residue ZN C 401
|
source |
: AC5
|
|
5)
|
chain |
C |
residue |
31-71 |
type |
prosite |
sequence |
NSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLI
P
|
description |
RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
|
source |
prosite : PS00446
|
|
|
|