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eF-site ID
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6bqf-B |
PDB Code
|
6bqf |
Chain
|
B |
|
click to enlarge
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Title
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Pol II elongation complex with 'dT-AP' at i+1, i-1 position |
Classification
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TRANSFERASE/TRANSCRIPTION |
Compound
|
DNA-directed RNA polymerase II subunit RPB1 |
Source
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(6BQF) |
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Sequence
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B: |
DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL
QDIICEDSTLIEISFGKIYVTKPMVNESDGVTHALYPQEA
RLRNLTYSSGLFVDVKKKVFIGRLPIMLRSKNCYLSEATE
SDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVF
KKAAPSPISHVAEIRSAISTLQVKLYGREGSSARTIKATL
PYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEM
LKPCVEDGFVIQDRETALDFIGRRGKEKRIQYAKDILQKE
FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRD
HFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTLAIN
AKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYS
STLSHLRRTNTPIAKPRQLHNTHWGLVCPAETPEGQACGL
VKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSP
DATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSM
IRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRK
GHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEESILIA
MQPEDLEPDVDPAKRIRVSHHATTFTHCEIHPSMILGVAA
SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMA
NILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGY
NQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITET
FEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIG
KTTPITAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKF
VKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTA
EGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGD
ASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMA
QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRS
RDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHIC
GICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLL
FQELMAMNITPRLYTDR
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Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
1163 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1301
|
source |
: AC4
|
|
2)
|
chain |
B |
residue |
1166 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1301
|
source |
: AC4
|
|
3)
|
chain |
B |
residue |
1182 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1301
|
source |
: AC4
|
|
4)
|
chain |
B |
residue |
1185 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1301
|
source |
: AC4
|
|
5)
|
chain |
B |
residue |
1185 |
type |
BINDING |
sequence |
C
|
description |
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
6)
|
chain |
B |
residue |
837 |
type |
catalytic |
sequence |
D
|
description |
788
|
source |
MCSA : MCSA1
|
|
7)
|
chain |
B |
residue |
977-989 |
type |
prosite |
sequence |
GDKFASRHGQKGT
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
|
source |
prosite : PS01166
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