eF-site ID 6b40-AEMN PDB Code 6b40 Chain A, E, M, N click to enlarge Title BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry Classification RECOMBINATION Compound RAG1L,RAG1L Source (A0A185KIE0_BRABE) Sequence A:  SCMTPEECLGMRLDMLMTKNQYSKEYNILKERGFSTLCPP KQLDAIEKTLMPGTARYSLEPDSVTMDFHEYVPDFPCPNT KGVRFPYAHAVAKTLEELEDEIVNGLKKLGRDPNDPTLVI HTICKDGADGMGDVSVHKEKSDHLLPDKALRFSFCVLRCS VMHKDTEVTIYEDPNPNSVRSNRPVLECIGDENDDGTVAV CVGPIECQRLLMKDKIMRVHMSDGTQRAHYLTFFNSMVDE KWDRAHGGLAGAGSKYLCTLCEAVRDEALEKAGSYKITRT LKKIEVTASKMKYESQEKDTFGVKGYPLLTTEPWERGIDA THTDINMGNYFKSLIVREMAQVHSWAKTANVKKQIVDAES KLDKHLKESLGLNPTLMMAGNYARELFKAEHADKLVALVD KPDRKSALVEVLAKFRQLRKVYRANWPLNDMSDEVRQYKA KAVEMANDLKTHFPYAPCTNYLHKVIEHVQELIEHPSGVG SVGALSSEGNEAGNKLFRQLRLGHARKGNTYNGLRDVLCT HWLYTSKTLRDKAAXXXXXXXXXXXXXXXXXXX E:  SCMTPEECLGMRLDMLMTKNQYSKEYNILKERGFSTLCPP KQLDAIEKTLMPGTARYSLEPDSVTMDFHEYVPDFPCPNT KGVRFPYAHAVAKTLEELEDEIVNGLKKLGRDPNDPTLVI HTICKDGADGMGDVSVHKEKSDHLLPDKALRFSFCVLRCS VMHKDTEVTIYEDPNPNSVRSNRPVLECIGDENDDGTVAV CVGPIECQRLLMKDKIMRVHMSDGTQRAHYLTFFNSMVDE KWDRAHGGLAGAGSKYLCTLCEAVRDEALEKAGSYKITRT LKKIEVTASKMKYESQEKDTFGVKGYPLLTTEPWERGIDA THTDINMGNYFKSLIVREMAQVHSWAKTANVKKQIVDAES KLDKHLKESLGLNPTLMMAGNYARELFKAEHADKLVALVD KPDRKSALVEVLAKFRQLRKVYRANWPLNDMSDEVRQYKA KAVEMANDLKTHFPYAPCTNYLHKVIEHVQELIEHPSGVG SVGALSSEGNEAGNKLFRQLRLGHARKGNTYNGLRDVLCT HWLYTSKTLRDKAAXXXXXXXXXXXXXXXXXXX M:  MSSGPIFSSLVTDSSRSSRKKSDSALGTEFTVVCDRVPLR DPSPTVQRFLCFVFDNGSGAMSTLPIDVGGEGISLSDMKE VKAMPHIASGCTAVWGPPLPPKPGKDTKQVILWGGLDKRR WCCSNDLTQVDITITPKTTTAKVSILPADKQDGVPSPRTG HTLVAISSLQAILFGGLELASRHARLGTCAQSCKDGYFYL LDMTTLRWNKLPLPPLVPRAYHSSTWVPASSTMVIVGGIT YSGHCPSERLSVSDVVCLKISDTSQYTLTEIHMEGVRDSY VSSSSASALCDDRFVLYGGYHHDKSGLHPPEPSRDLYVMN LQTKKAVVHHAPTRMASAGHTCLRLIDNSVVMIGGTCKSV NCCTNL N:  MSSGPIFSSLVTDSSRSSRKKSDSALGTEFTVVCDRVPLR DPSPTVQRFLCFVFDNGSGAMSTLPIDVGGEGISLSDMKE VKAMPHIASGCTAVWGPPLPPKPGKDTKQVILWGGLDKRR WCCSNDLTQVDITITPKTTTAKVSILPADKQDGVPSPRTG HTLVAISSLQAILFGGLELASRHARLGTCAQSCKDGYFYL LDMTTLRWNKLPLPPLVPRAYHSSTWVPASSTMVIVGGIT YSGHCPSERLSVSDVVCLKISDTSQYTLTEIHMEGVRDSY VSSSSASALCDDRFVLYGGYHHDKSGLHPPEPSRDLYVMN LQTKKAVVHHAPTRMASAGHTCLRLIDNSVVMIGGTCKSV NCCTNL Description Functional site 1) chain A residue 701 type sequence D description binding site for residue CA A 1201 source : AC1 2) chain A residue 702 type sequence G description binding site for residue CA A 1201 source : AC1 3) chain A residue 830 type sequence C description binding site for residue ZN A 1202 source : AC2 4) chain A residue 833 type sequence C description binding site for residue ZN A 1202 source : AC2 5) chain A residue 1035 type sequence H description binding site for residue ZN A 1202 source : AC2 6) chain A residue 1040 type sequence H description binding site for residue ZN A 1202 source : AC2 7) chain E residue 701 type sequence D description binding site for residue CA E 1201 source : AC3 8) chain E residue 702 type sequence G description binding site for residue CA E 1201 source : AC3 9) chain E residue 830 type sequence C description binding site for residue ZN E 1202 source : AC4 10) chain E residue 833 type sequence C description binding site for residue ZN E 1202 source : AC4 11) chain E residue 1035 type sequence H description binding site for residue ZN E 1202 source : AC4 12) chain E residue 1040 type sequence H description binding site for residue ZN E 1202 source : AC4

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