eF-site ID 6agp_15-A
PDB Code 6agp
Model 15
Chain A

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Title Structure of Rac1 in the low-affinity state for Mg2+
Classification SIGNALING PROTEIN
Compound Ras-related C3 botulinum toxin substrate 1
Source (RAC1_HUMAN)
Sequence A:  MQAIKCVVVGDGAVGKTCLLISYTTNAFPGCYIPTVFDNY
SANVMVDGKPVNLGLWDTAGQECYDRLRPLSYPCTDVFLI
CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR
DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAC
TQRGLKTVFDEAIRAVLCPPP
Description (1)  Ras-related C3 botulinum toxin substrate 1


Functional site

1) chain A
residue 11
type
sequence D
description binding site for residue GDP A 201
source : AC1

2) chain A
residue 12
type
sequence G
description binding site for residue GDP A 201
source : AC1

3) chain A
residue 13
type
sequence A
description binding site for residue GDP A 201
source : AC1

4) chain A
residue 14
type
sequence V
description binding site for residue GDP A 201
source : AC1

5) chain A
residue 15
type
sequence G
description binding site for residue GDP A 201
source : AC1

6) chain A
residue 16
type
sequence K
description binding site for residue GDP A 201
source : AC1

7) chain A
residue 17
type
sequence T
description binding site for residue GDP A 201
source : AC1

8) chain A
residue 18
type
sequence C
description binding site for residue GDP A 201
source : AC1

9) chain A
residue 116
type
sequence K
description binding site for residue GDP A 201
source : AC1

10) chain A
residue 118
type
sequence D
description binding site for residue GDP A 201
source : AC1

11) chain A
residue 119
type
sequence L
description binding site for residue GDP A 201
source : AC1

12) chain A
residue 159
type
sequence A
description binding site for residue GDP A 201
source : AC1

13) chain A
residue 160
type
sequence C
description binding site for residue GDP A 201
source : AC1

14) chain A
residue 17
type
sequence T
description binding site for residue MG A 202
source : AC2

15) chain A
residue 147
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:18093184
source Swiss-Prot : SWS_FT_FI8

16) chain A
residue 166
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:23512198
source Swiss-Prot : SWS_FT_FI9

17) chain A
residue 60
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:11090627, ECO:0007744|PDB:1E96, ECO:0007744|PDB:2WKP, ECO:0007744|PDB:2WKQ, ECO:0007744|PDB:2WKR
source Swiss-Prot : SWS_FT_FI1

18) chain A
residue 13
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:11090627, ECO:0007744|PDB:1E96, ECO:0007744|PDB:2WKP, ECO:0007744|PDB:2WKQ, ECO:0007744|PDB:2WKR
source Swiss-Prot : SWS_FT_FI1

19) chain A
residue 30
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:11090627, ECO:0007744|PDB:1E96, ECO:0007744|PDB:2WKP, ECO:0007744|PDB:2WKQ, ECO:0007744|PDB:2WKR
source Swiss-Prot : SWS_FT_FI1

20) chain A
residue 159
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:11090627, ECO:0007744|PDB:1E96, ECO:0007744|PDB:2WKP, ECO:0007744|PDB:2WKQ, ECO:0007744|PDB:2WKR, ECO:0007744|PDB:5HZH
source Swiss-Prot : SWS_FT_FI2

21) chain A
residue 116
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:11090627, ECO:0007744|PDB:1E96, ECO:0007744|PDB:2WKP, ECO:0007744|PDB:2WKQ, ECO:0007744|PDB:2WKR, ECO:0007744|PDB:5HZH
source Swiss-Prot : SWS_FT_FI2

22) chain A
residue 32
type MOD_RES
sequence Y
description (Microbial infection) O-AMP-tyrosine; by Haemophilus IbpA; alternate => ECO:0000269|PubMed:19362538
source Swiss-Prot : SWS_FT_FI3

23) chain A
residue 35
type MOD_RES
sequence T
description (Microbial infection) O-AMP-threonine; by Vibrio VopS => ECO:0000269|PubMed:19039103
source Swiss-Prot : SWS_FT_FI4

24) chain A
residue 71
type MOD_RES
sequence S
description Phosphoserine => ECO:0000269|PubMed:10617634
source Swiss-Prot : SWS_FT_FI5

25) chain A
residue 32
type CARBOHYD
sequence Y
description (Microbial infection) O-linked (GlcNAc) tyrosine; by Photorhabdus PAU_02230; alternate => ECO:0000269|PubMed:24141704
source Swiss-Prot : SWS_FT_FI6

26) chain A
residue 35
type CARBOHYD
sequence T
description (Microbial infection) O-linked (Glc) threonine; by C.difficile toxins TcdA and TcdB, and by P.sordellii toxin TcsL; alternate => ECO:0000269|PubMed:19744486, ECO:0000269|PubMed:24905543, ECO:0000269|PubMed:7775453, ECO:0000269|PubMed:7777059
source Swiss-Prot : SWS_FT_FI7


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