eF-site ID 6agb-BCDEFGHIJK
PDB Code 6agb
Chain B, C, D, E, F, G, H, I, J, K
Title Cryo-EM structure of yeast Ribonuclease P
Classification HYDROLASE/RNA
Compound Ribonuclease P RNA
Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c);
Sequence B:  GSKLNVDQFISSRQFEVKQLQLAMHNSKAASSTRIFQALP
RKLRRRTASHNVRRIPKRMRNRALREMRKSDAHGLNAKQL
YKARMSIKLLRLASKSTSMKLSMPPEVTSSNCHVRQKIKT
LKRMIKESSTANPNIKLLNNRMGSYDCTGVNELAPIPKGR
VKYTKRQKHFAWLPTHIWNAKRSHMMKRWGYQMVWAPTQK
CFKLTHRLGGDTCSSDGALCMDSSYIGTIIVKDKSNDSEG
DFLKSIIGKLTAERANLRKYREGQVLFQGLIYSFNEENGE
DSTKPLGPCDVFWVQKDTAIIRLHPSIYTQVFNILLQHKE
KLTVQDCRYSLASVTLKGAKALESLASCLRSTEYSKSFEQ
FKMVSMITDHNALPQRCTFAFEAIDPRHLAAPKKLNDSQR
KTVNSDDILSLHENYPQDEINAVFNELCDPESRTQSYNNQ
NTLKEISARRYKLLTATKTTVPFKESDDPSIPLVIIRRLK
TRDWIVVLPWFWLLPLWHLLNRIPRMYHIGLRQFQQIQYE
NKQLYFPDDYPFTQLGYIENSFYKKEASKTKWDRKPMGKR
INFEKIKDIHNTKLPAYSGEIGDFFSSDWRFLQILRNGID
YLQRNDKTLELMDGVRDINCVNDVLEFCKDYEAKTKAMSL
SIEENIPVALCKNRKCQFRTSFSLTFFPRCIIAVSCTLLE
RGHPKDNARIYQVPEKDLEHWLQLAKGVYRPNGRKDHDLK
IPLPEVHDLIGFITSGTYHLNCGNGMGIGFIDHHAAIRQP
TRYVLIRNVGTNTYRLGEWSKISV
C:  KRRQVYKPVLDNPFTNEAHMWPRVHDQPLIWQLLQSSIIN
KLIHIQSKENYPWELYTDFNEIVQYLSGAHGNSDPVCLFV
CNKDPDVPLVLLQQIPLLCYMAPMTVKLVQLPKSAMDTFK
SVSKYGMLLLRCDDRVDKKFVSQIQKNVDLLQFPWLNAIK
YRPTSVKLLKTTVPI
D:  MDRTQTFIKDCLFTKCLEDPEKPFDYQRINKNSKIALREY
INNCKKNTKKCLKLAYENKITDKEDLLHYIEEKHPTIYES
LPQYVDFVPMYKELWINYIKELLNITKNLKTFNGSLALLK
LSMADYNGALLRVTKSKNKTLIGLQGIVIWDSQKFFIMIV
KGNIIDEIKCIPKKGTVFQFEIPISDDDDSALRYSILGDR
FKYRSVDRAGRKFKSRRCDDMLYYIQN
E:  VRLKSRYILFEIIFPPTDTNVEESVSKADILLSHHRASPA
DVSIKSILQEIRRSLSLNLGDYGSAKCNSLLQLKYFSNKT
STGIIRCHREDCDLVIMALMLMSKIGDVDGLIVNPVKVSG
TIKKIEQFAMRRNSKILNIIKCSQSS
F:  INGVYYNEISRDLDISSSTQCLRFLKETVIPSLANNGNNS
TSIQYHGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCI
FSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIK
REGRNELQEERLKVPILVTLVSDSEIIDLNLHSFTKQ
G:  KRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFL
DSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQKNKKIEV
YTKTIEVLDEVITEGSDVEDDDKETQLKKRAVSGVELRIY
V
H:  KKTFREWQYFKLSITSFDQDVDDAHAIDQMTWRQWLNNAL
KRSYGIFGEGVEYSFLHVDDKLAYIRVNHADKDTFSSSIS
TYISTDELVGSPLTVSILQESSSLRLLEVTDDDRLWLKKV
MEEEEQDCKCI
I:  MLVDLNVPWPQNSYADKVTSQAVNNLIKTLSTLHMLGYTH
IAINFTVNHSEKFPNDVKLLNPIDIKRRFGELMDRTGLKL
YSRITLIIDDPSKGQSLSKISQAFDIVAALPISEKGLTLS
TTNLDIDLLTFQYGSRLPTFLKHKSICSCVNRGVKLEIVY
GYALRDVQARRQFVSNVRSVIRSSRSRGIVIGSGAMSPLE
CRNILGVTSLIKNLGLPSDRCSKAMGDLASLVLLNGRLRN
KS
J:  MLVDLNVPWPQNSYADKVTSQAVNNLIKTLSTLHMLGYTH
IAINFTVNHSEKFPNDVKLLNPIDIKRRFGELMDRTGLKL
YSRITLIIDDPSKGQSLSKISQAFDIVAALPISEKGLTLS
TTNLDIDLLTFQYGSRLPTFLKHKSICSCVNRGVKLEIVY
GYALRDVQARRQFVSNVRSVIRSSRSRGIVIGSGAMSPLE
CRNILGVTSLIKNLGLPSDRCSKAMGDLASLVLLNGRLRN
KSHKQTIVTGGGSGNGDDVVNDVQGIDDVQTIKVVKRSMD
AEQLGHASKRHKP
K:  NGTLLVPPPRTIANQDHFHRLNYLYQISAYQTRARQKART
DAHTPLARNYIKSMDLISKKTKTSLLPTIKRTICKKCHRL
LWTPKKLEITSDGALSVMCGCGTVKRFNIGADPNYRTYSE
REGNLLNS
Description


Functional site

1) chain K
residue 90
type
sequence C
description binding site for residue ZN K 201
source : AC1

2) chain K
residue 93
type
sequence C
description binding site for residue ZN K 201
source : AC1

3) chain K
residue 115
type
sequence C
description binding site for residue ZN K 201
source : AC1

4) chain K
residue 117
type
sequence C
description binding site for residue ZN K 201
source : AC1

5) chain K
residue 90
type BINDING
sequence C
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

6) chain K
residue 93
type BINDING
sequence C
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

7) chain K
residue 115
type BINDING
sequence C
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

8) chain K
residue 117
type BINDING
sequence C
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1


Display surface

Download
Links