eF-site ID 6afk-B
PDB Code 6afk
Chain B

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Title Crystal structure of TrmD from Pseudomonas aeruginosa in complex with active-site inhibitor
Classification TRANSFERASE
Compound tRNA (guanine-N(1)-)-methyltransferase
Source (TRMD_PSEAB)
Sequence B:  SMLWVGVVSIFPEMFRAISDYGITSRAVKQGLLTLTCWNP
RVYTEDRHQTVDDRPFGGGPGMVMKIKPLEGALADARQAA
GGRKAKVIYLSPQGRQLTQAGVRELAEEEALILIAGRYEG
IDERFIEEHVDEEWSIGDYVLSGGELPAMVLVDAVTRLLP
GALDSAEEDSFTDGLLDCPHYTRPEVYADKRVPEVLLSGN
HEHIRRWRLQQALGRTWERRADLLDSRSLSGEEQKLLAEY
IRQRD
Description


Functional site

1) chain B
residue 169
type
sequence D
description binding site for residue SAM A 301
source : AC1

2) chain B
residue 174
type
sequence D
description binding site for residue SAM A 301
source : AC1

3) chain B
residue 175
type
sequence S
description binding site for residue SAM A 301
source : AC1

4) chain B
residue 182
type
sequence D
description binding site for residue SAM A 301
source : AC1

5) chain B
residue 185
type
sequence H
description binding site for residue SAM A 301
source : AC1

6) chain B
residue 91
type
sequence Y
description binding site for residue 9WO B 301
source : AC2

7) chain B
residue 120
type
sequence Y
description binding site for residue 9WO B 301
source : AC2

8) chain B
residue 121
type
sequence E
description binding site for residue 9WO B 301
source : AC2

9) chain B
residue 122
type
sequence G
description binding site for residue 9WO B 301
source : AC2

10) chain B
residue 137
type
sequence S
description binding site for residue 9WO B 301
source : AC2

11) chain B
residue 138
type
sequence I
description binding site for residue 9WO B 301
source : AC2

12) chain B
residue 139
type
sequence G
description binding site for residue 9WO B 301
source : AC2

13) chain B
residue 141
type
sequence Y
description binding site for residue 9WO B 301
source : AC2

14) chain B
residue 142
type
sequence V
description binding site for residue 9WO B 301
source : AC2

15) chain B
residue 143
type
sequence L
description binding site for residue 9WO B 301
source : AC2

16) chain B
residue 145
type
sequence G
description binding site for residue 9WO B 301
source : AC2

17) chain B
residue 149
type
sequence P
description binding site for residue 9WO B 301
source : AC2

18) chain B
residue 118
type BINDING
sequence G
description BINDING => ECO:0000255|HAMAP-Rule:MF_00605
source Swiss-Prot : SWS_FT_FI1

19) chain B
residue 138
type BINDING
sequence I
description BINDING => ECO:0000255|HAMAP-Rule:MF_00605
source Swiss-Prot : SWS_FT_FI1


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