eF-site ID 6abm-A
PDB Code 6abm
Chain A

click to enlarge
Title Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pTmdZLys
Classification TRANSLATION
Compound Pyrrolysine--tRNA ligase
Source (PYLS_METMA)
Sequence A:  PALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRR
KKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPIL
IPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLAN
YLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNF
CQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDT
LDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERL
LKVKHDFKNIKRAARSGSYYNGISTNL
Description


Functional site

1) chain A
residue 396
type
sequence E
description binding site for residue MG A 502
source : AC2

2) chain A
residue 399
type
sequence S
description binding site for residue MG A 502
source : AC2

3) chain A
residue 396
type
sequence E
description binding site for residue MG A 503
source : AC3

4) chain A
residue 330
type
sequence R
description binding site for residue ATP A 504
source : AC4

5) chain A
residue 332
type
sequence E
description binding site for residue ATP A 504
source : AC4

6) chain A
residue 338
type
sequence H
description binding site for residue ATP A 504
source : AC4

7) chain A
residue 339
type
sequence L
description binding site for residue ATP A 504
source : AC4

8) chain A
residue 342
type
sequence F
description binding site for residue ATP A 504
source : AC4

9) chain A
residue 344
type
sequence M
description binding site for residue ATP A 504
source : AC4

10) chain A
residue 396
type
sequence E
description binding site for residue ATP A 504
source : AC4

11) chain A
residue 397
type
sequence L
description binding site for residue ATP A 504
source : AC4

12) chain A
residue 398
type
sequence S
description binding site for residue ATP A 504
source : AC4

13) chain A
residue 399
type
sequence S
description binding site for residue ATP A 504
source : AC4

14) chain A
residue 421
type
sequence G
description binding site for residue ATP A 504
source : AC4

15) chain A
residue 423
type
sequence G
description binding site for residue ATP A 504
source : AC4

16) chain A
residue 426
type
sequence R
description binding site for residue ATP A 504
source : AC4

17) chain A
residue 276
type
sequence M
description binding site for residue 9VR A 505
source : AC5

18) chain A
residue 302
type
sequence A
description binding site for residue 9VR A 505
source : AC5

19) chain A
residue 306
type
sequence A
description binding site for residue 9VR A 505
source : AC5

20) chain A
residue 346
type
sequence N
description binding site for residue 9VR A 505
source : AC5

21) chain A
residue 348
type
sequence C
description binding site for residue 9VR A 505
source : AC5

22) chain A
residue 384
type
sequence F
description binding site for residue 9VR A 505
source : AC5

23) chain A
residue 399
type
sequence S
description binding site for residue 9VR A 505
source : AC5

24) chain A
residue 407
type
sequence L
description binding site for residue 9VR A 505
source : AC5

25) chain A
residue 408
type
sequence D
description binding site for residue 9VR A 505
source : AC5

26) chain A
residue 411
type
sequence W
description binding site for residue 9VR A 505
source : AC5

27) chain A
residue 417
type
sequence W
description binding site for residue 9VR A 505
source : AC5

28) chain A
residue 419
type
sequence G
description binding site for residue 9VR A 505
source : AC5

29) chain A
residue 420
type
sequence A
description binding site for residue 9VR A 505
source : AC5

30) chain A
residue 204
type
sequence P
description binding site for residue K A 506
source : AC6

31) chain A
residue 206
type
sequence D
description binding site for residue K A 506
source : AC6

32) chain A
residue 341
type
sequence E
description binding site for residue K A 507
source : AC7

33) chain A
residue 442
type
sequence R
description binding site for residue K A 507
source : AC7

34) chain A
residue 368
type
sequence N
description binding site for residue K A 508
source : AC8

35) chain A
residue 372
type
sequence I
description binding site for residue K A 508
source : AC8


Display surface

Download
Links