eF-site ID 6ab6-C
PDB Code 6ab6
Chain C

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Title Cryo-EM structure of T=3 Penaeus vannamei nodavirus
Classification VIRUS LIKE PARTICLE
Compound Capsid protein
Source (A5H7Q8_9VIRU)
Sequence C:  RRRVVINQSNQSMPVTSNGAPLQALTSYSRPNVNKISRLG
PDSDFLTSVVAKASTSIVTPADRILVKQPLSASSFPGTRI
TGLSSYWERYKWLSAVARYVPAVPNTVACQFVMYIDTDPL
DDPSNISDDNQIVRQAVSQAGSNQFNFNTSKTVPLIVRAD
NQYYYTGVDKQNLRFSLQGILYIIQVTDLINFNGELITQD
LTCGSLFLDWLVNFSIPQINPTSLTDVRVDKAVNFIKPEV
SGVAEIQTVTGLSPSTSYLLTPAFLEQNFQSEAGIYILSA
TPVEGEGTISINMDPTVTTVSGFIKVKTDTFGTFDLSVVL
TTASKKQTTGFNIIAAT
Description


Functional site

1) chain C
residue 146
type
sequence D
description binding site for residue CA A 403
source : AC3

2) chain C
residue 148
type
sequence D
description binding site for residue CA A 403
source : AC3

3) chain C
residue 151
type
sequence D
description binding site for residue CA A 403
source : AC3

4) chain C
residue 118
type
sequence E
description binding site for residue CA B 401
source : AC4

5) chain C
residue 248
type
sequence Q
description binding site for residue CA B 401
source : AC4

6) chain C
residue 250
type
sequence N
description binding site for residue CA B 402
source : AC5

7) chain C
residue 148
type
sequence D
description binding site for residue CA C 401
source : AC6

8) chain C
residue 151
type
sequence D
description binding site for residue CA C 401
source : AC6


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