eF-site ID 6ab6-B
PDB Code 6ab6
Chain B

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Title Cryo-EM structure of T=3 Penaeus vannamei nodavirus
Classification VIRUS LIKE PARTICLE
Compound Capsid protein
Source (A5H7Q8_9VIRU)
Sequence B:  ISRLGPDSDFLTSVVAKASTSIVTPADRILVKQPLSASSF
PGTRITGLSSYWERYKWLSAVARYVPAVPNTVACQFVMYI
DTDPLDDPSNISDDNQIVRQAVSQAGSNQFNFNTSKTVPL
IVRADNQYYYTGVDKQNLRFSLQGILYIIQVTDLINFNGE
LITQDLTCGSLFLDWLVNFSIPQINPTSLTDVRVDKAVNF
IKPEVSGVAEIQTVTGLSPSTSYLLTPAFLEQNFQSEAGI
YILSATPVEGEGTISINMDPTVTTVSGFIKVKTDTFGTFD
LSVVLTTASKKQTTGFNIIAATS
Description


Functional site

1) chain B
residue 118
type
sequence E
description binding site for residue CA A 401
source : AC1

2) chain B
residue 250
type
sequence N
description binding site for residue CA A 401
source : AC1

3) chain B
residue 118
type
sequence E
description binding site for residue CA A 402
source : AC2

4) chain B
residue 248
type
sequence Q
description binding site for residue CA A 402
source : AC2

5) chain B
residue 146
type
sequence D
description binding site for residue CA B 401
source : AC4

6) chain B
residue 148
type
sequence D
description binding site for residue CA B 401
source : AC4

7) chain B
residue 151
type
sequence D
description binding site for residue CA B 401
source : AC4

8) chain B
residue 148
type
sequence D
description binding site for residue CA B 402
source : AC5

9) chain B
residue 151
type
sequence D
description binding site for residue CA B 402
source : AC5


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