eF-site ID 6ab6-A
PDB Code 6ab6
Chain A

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Title Cryo-EM structure of T=3 Penaeus vannamei nodavirus
Classification VIRUS LIKE PARTICLE
Compound Capsid protein
Source (A5H7Q8_9VIRU)
Sequence A:  ISRLGPDSDFLTSVVAKASTSIVTPADRILVKQPLSASSF
PGTRITGLSSYWERYKWLSAVARYVPAVPNTVACQFVMYI
DTDPLDDPSNISDDNQIVRQAVSQAGSNQFNFNTSKTVPL
IVRADNQYYYTGVDKQNLRFSLQGILYIIQVTDLINFNGE
LITQDLTCGSLFLDWLVNFSIPQINPTSLTDVRVDKAVNF
IKPEVSGVAEIQTVTGLSPSTSYLLTPAFLEQNFQSEAGI
YILSATPVEGEGTISINMDPTVTTVSGFIKVKTDTFGTFD
LSVVLTTASKKQTTGFNIIAATS
Description


Functional site

1) chain A
residue 148
type
sequence D
description binding site for residue CA A 401
source : AC1

2) chain A
residue 151
type
sequence D
description binding site for residue CA A 401
source : AC1

3) chain A
residue 146
type
sequence D
description binding site for residue CA A 402
source : AC2

4) chain A
residue 151
type
sequence D
description binding site for residue CA A 402
source : AC2

5) chain A
residue 118
type
sequence E
description binding site for residue CA A 403
source : AC3

6) chain A
residue 248
type
sequence Q
description binding site for residue CA A 403
source : AC3

7) chain A
residue 250
type
sequence N
description binding site for residue CA C 401
source : AC6


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