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eF-site ID
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6a6l-A |
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PDB Code
|
6a6l |
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Chain
|
A |
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click to enlarge
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Title
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Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA |
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Classification
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RNA BINDING PROTEIN/RNA |
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Compound
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Nuclease-sensitive element-binding protein 1 |
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Source
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(6A6L) |
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Sequence
|
A: |
KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI
KKNNPYLRSVGDGETVEFDVVEGEKGAEAANVTGPG
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Description
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Functional site
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|
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1)
|
chain |
A |
| residue |
72-91 |
| type |
prosite |
| sequence |
YGFINRNDTKEDVFVHQTAI
|
| description |
CSD_1 Cold-shock (CSD) domain signature. YGFInrndtkeDVFvHqTaI
|
| source |
prosite : PS00352
|
|
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2)
|
chain |
A |
| residue |
65 |
| type |
SITE |
| sequence |
W
|
| description |
Important for C5-methylcytosine-recognition => ECO:0000269|PubMed:31358969
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| source |
Swiss-Prot : SWS_FT_FI1
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3)
|
chain |
A |
| residue |
102 |
| type |
MOD_RES |
| sequence |
S
|
| description |
Phosphoserine; by PKB/AKT1 => ECO:0000269|PubMed:15806160, ECO:0007744|PubMed:19690332
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| source |
Swiss-Prot : SWS_FT_FI2
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