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|
eF-site ID
|
6a6j-C |
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PDB Code
|
6a6j |
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Chain
|
C |
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click to enlarge
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Title
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Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA |
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Classification
|
RNA BINDING PROTEIN/RNA |
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Compound
|
Zebra fish Y-box protein1 (YB-1) |
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Source
|
(6A6J) |
|
|
Sequence
|
C: |
KVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK
KNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP
VQGSKYAADR
|
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Description
|
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Functional site
|
|
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1)
|
chain |
C |
| residue |
97 |
| type |
|
| sequence |
E
|
| description |
binding site for residue ZN C 201
|
| source |
: AC2
|
|
|
2)
|
chain |
C |
| residue |
101 |
| type |
|
| sequence |
E
|
| description |
binding site for residue ZN C 201
|
| source |
: AC2
|
|
|
3)
|
chain |
C |
| residue |
45 |
| type |
SITE |
| sequence |
W
|
| description |
Important for C5-methylcytosine-recognition => ECO:0000269|PubMed:31358969
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
4)
|
chain |
C |
| residue |
82 |
| type |
MOD_RES |
| sequence |
S
|
| description |
Phosphoserine; by PKB/AKT1 => ECO:0000269|PubMed:15806160, ECO:0007744|PubMed:19690332
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
5)
|
chain |
C |
| residue |
117 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:18851979
|
| source |
Swiss-Prot : SWS_FT_FI3
|
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|
|