eF-site ID 6a6j-AC PDB Code 6a6j Chain A, C click to enlarge Title Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA Classification RNA BINDING PROTEIN/RNA Compound Zebra fish Y-box protein1 (YB-1) Source (6A6J) Sequence A:  KVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK KNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP VQGSKYAADR C:  KVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK KNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP VQGSKYAADR Description Functional site 1) chain A residue 97 type sequence E description binding site for residue ZN A 201 source : AC1 2) chain A residue 101 type sequence E description binding site for residue ZN A 201 source : AC1 3) chain C residue 97 type sequence E description binding site for residue ZN C 201 source : AC2 4) chain C residue 101 type sequence E description binding site for residue ZN C 201 source : AC2 5) chain A residue 52-71 type prosite sequence YGFINRNDTKEDVFVHQTAI description CSD_1 Cold-shock (CSD) domain signature. YGFInrndtkeDVFvHqTaI source prosite : PS00352 6) chain A residue 45 type SITE sequence W description Important for C5-methylcytosine-recognition => ECO:0000269|PubMed:31358969 source Swiss-Prot : SWS_FT_FI1 7) chain C residue 45 type SITE sequence W description Important for C5-methylcytosine-recognition => ECO:0000269|PubMed:31358969 source Swiss-Prot : SWS_FT_FI1 8) chain A residue 82 type MOD_RES sequence S description Phosphoserine; by PKB/AKT1 => ECO:0000269|PubMed:15806160, ECO:0007744|PubMed:19690332 source Swiss-Prot : SWS_FT_FI2 9) chain C residue 82 type MOD_RES sequence S description Phosphoserine; by PKB/AKT1 => ECO:0000269|PubMed:15806160, ECO:0007744|PubMed:19690332 source Swiss-Prot : SWS_FT_FI2 10) chain A residue 117 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:18851979 source Swiss-Prot : SWS_FT_FI3 11) chain C residue 117 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:18851979 source Swiss-Prot : SWS_FT_FI3

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