eF-site ID 6a5p-A
PDB Code 6a5p
Chain A

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Title RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome
Classification TRANSCRIPTION/RNA/DNA
Compound DNA-directed RNA polymerase subunit
Source ORGANISM_COMMON: Yeast; ORGANISM_SCIENTIFIC: Komagataella phaffii (strain GS115 / ATCC 20864);
Sequence A:  SQFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIM
DESRQRPREGGLNDPKLGSIDRNFKCQTCGEGMAECPGHF
GHMELAKPVFHIGFIPKIKKVCECICMNCGKLLLDETNPT
MAQAIRIRDPKKRFNAVWQLCKTKMVCEADAPKVVSRGGC
GNTQPVVRKDGMKLWGTWKKSRDAQPERKLLTPGEILNVF
KHISPEDCFRLGFNEDYARPEWMIITVLPVPPPQVRPSIA
MDETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHIINE
VEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKG
KEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISIA
KTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDNGD
RIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLH
KMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV
PQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGV
RKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKPL
WTGKQLLSIAIPSGIHLQRTDGGNSLLSPKDNGMLIVDGK
VMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQK
VVNYWLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQ
EIIYKAQHNELELKPGMTLRESFEGEVSRTLNDARDSAGR
SAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVE
GKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQ
EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVH
YDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDK
AFHKRYYVDLMDEKNSIKPDVIEYAADILGDVELQKELNS
EYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQI
FHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEA
QQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIE
AQFQRSLVHPGEMVGVIAAQSIGEPATQMNVTLGVPRLKE
ILNVAKNIKTPALTVYLDREIALDIEKAKVIQSSIEYTTL
KNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSQSPWLLRL
ELDRARMLDKQLTMNQVADKISEVFSDDLFVMWSEDNADK
LIIRCRVIEEDQMLKRIEAHMLDLIALRGIPGISKVYMVK
HKVSVPDESGEYKNEELWALETDGINLAEVMAVPGVDSSR
TYSNSFVEILSVLGIEATRSSLYKEILNVIAFDGSYVNYR
HMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETV
EILFEAGAAAELDDCRGVSENVMLGQLAPMGTGAFDVMID
EKLLTSLP
Description


Functional site

1) chain A
residue 67
type
sequence C
description binding site for residue ZN A 1801
source : AC1

2) chain A
residue 70
type
sequence C
description binding site for residue ZN A 1801
source : AC1

3) chain A
residue 77
type
sequence C
description binding site for residue ZN A 1801
source : AC1

4) chain A
residue 80
type
sequence H
description binding site for residue ZN A 1801
source : AC1

5) chain A
residue 107
type
sequence C
description binding site for residue ZN A 1802
source : AC2

6) chain A
residue 148
type
sequence C
description binding site for residue ZN A 1802
source : AC2

7) chain A
residue 167
type
sequence G
description binding site for residue ZN A 1802
source : AC2

8) chain A
residue 168
type
sequence C
description binding site for residue ZN A 1802
source : AC2

9) chain A
residue 482
type
sequence D
description binding site for residue MG A 1803
source : AC3

10) chain A
residue 484
type
sequence D
description binding site for residue MG A 1803
source : AC3


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