eF-site ID 6a5p-C
PDB Code 6a5p
Chain C

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Title RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome
Classification TRANSCRIPTION/RNA/DNA
Compound DNA-directed RNA polymerase subunit
Source ORGANISM_COMMON: Yeast; ORGANISM_SCIENTIFIC: Komagataella phaffii (strain GS115 / ATCC 20864);
Sequence C:  EPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTL
AIDLVEIKMNTSVLADEFISHRLGLIPLVSEDVEEMKYSR
DCTCEDYCDECSVVLELSARHEGEEGTTDVYSSSLIKVSG
PGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGI
AKEHAKWSPCSAIAFEYDPHNKLKHTDFWFEVDAKKEWPD
SKYATWEEPPKPGEVFDYKAKPNRFYMTVETTGSLKANQV
FSRGIKTLQEKLANVLFELENSR
Description


Functional site
1) chain C
residue 85
type
sequence C
description binding site for residue ZN C 401
source : AC5
2) chain C
residue 87
type
sequence C
description binding site for residue ZN C 401
source : AC5
3) chain C
residue 91
type
sequence C
description binding site for residue ZN C 401
source : AC5
4) chain C
residue 93
type
sequence E
description binding site for residue ZN C 401
source : AC5
5) chain C
residue 30-70
type prosite
sequence NSLRRTMLAEVPTLAIDLVEIKMNTSVLADEFISHRLGLI
P
description RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRtmlaevptlAidlVeikmNtSvlaDEfIShRLGLIP
source prosite : PS00446

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